Started by timer Checking out git https://github.com/adamantine-sim/adamantine into /var/jenkins_home/workspace/adamantine-nightly@script/769419fd3c5a9c81c4beafaeab26398461553595cef1aaea2775372c607f95c5 to read ci/nightly.groovy Selected Git installation does not exist. Using Default The recommended git tool is: NONE using credential e7df5eb2-574e-4ec2-98aa-f2e31f069fb4 > git rev-parse --resolve-git-dir /var/jenkins_home/workspace/adamantine-nightly@script/769419fd3c5a9c81c4beafaeab26398461553595cef1aaea2775372c607f95c5/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/adamantine-sim/adamantine # timeout=10 Fetching upstream changes from https://github.com/adamantine-sim/adamantine > git --version # timeout=10 > git --version # 'git version 2.47.3' using GIT_ASKPASS to set credentials Jenkins Bruno > git fetch --tags --force --progress -- https://github.com/adamantine-sim/adamantine +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision c6d64a7b6447d17915532b3254cd87988fbf16ba (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f c6d64a7b6447d17915532b3254cd87988fbf16ba # timeout=10 Commit message: "Save the plastic strain instead of the stress (#515)" > git rev-list --no-walk c6d64a7b6447d17915532b3254cd87988fbf16ba # timeout=10 [Pipeline] Start of Pipeline [Pipeline] withEnv [Pipeline] { [Pipeline] timeout Timeout set to expire in 6 hr 0 min [Pipeline] { [Pipeline] stage [Pipeline] { (Test) [Pipeline] parallel [Pipeline] { (Branch: CPU) [Pipeline] { (Branch: CUDA) [Pipeline] stage [Pipeline] { (CPU) [Pipeline] stage [Pipeline] { (CUDA) [Pipeline] node [Pipeline] node Running on lascaux_02 in /var/jenkins/workspace/adamantine-nightly Running on waffle_03 in /var/jenkins/workspace/adamantine-nightly [Pipeline] { [Pipeline] { [Pipeline] checkout ERROR: Checkout failed hudson.remoting.ChannelClosedException: Channel "unknown": Protocol stack cannot write data anymore. It is not open for write at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer$ByteBufferCommandTransport.write(ChannelApplicationLayer.java:338) at hudson.remoting.AbstractByteBufferCommandTransport.write(AbstractByteBufferCommandTransport.java:336) at hudson.remoting.Channel.send(Channel.java:829) at hudson.remoting.Request.call(Request.java:168) at hudson.remoting.Channel.call(Channel.java:1107) at hudson.FilePath.act(FilePath.java:1245) at hudson.FilePath.act(FilePath.java:1234) at hudson.FilePath.mkdirs(FilePath.java:1425) at PluginClassLoader for git//hudson.plugins.git.GitSCM.createClient(GitSCM.java:843) at PluginClassLoader for git//hudson.plugins.git.GitSCM._checkout(GitSCM.java:1299) at PluginClassLoader for git//hudson.plugins.git.GitSCM.checkout(GitSCM.java:1277) at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep.checkout(SCMStep.java:136) at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:101) at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:88) at PluginClassLoader for workflow-step-api//org.jenkinsci.plugins.workflow.steps.SynchronousNonBlockingStepExecution.lambda$start$0(SynchronousNonBlockingStepExecution.java:49) at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.base/java.lang.Thread.run(Unknown Source) ERROR: Maximum checkout retry attempts reached, aborting [Pipeline] checkout Selected Git installation does not exist. Using Default The recommended git tool is: NONE using credential e7df5eb2-574e-4ec2-98aa-f2e31f069fb4 [Pipeline] } Fetching changes from the remote Git repository [Pipeline] // node [Pipeline] } [Pipeline] // stage [Pipeline] } Failed in branch CPU Checking out Revision c6d64a7b6447d17915532b3254cd87988fbf16ba (refs/remotes/origin/master) Commit message: "Save the plastic strain instead of the stress (#515)" > git rev-parse --resolve-git-dir /var/jenkins/workspace/adamantine-nightly/.git # timeout=10 > git config remote.origin.url https://github.com/adamantine-sim/adamantine # timeout=10 Fetching upstream changes from https://github.com/adamantine-sim/adamantine > git --version # timeout=10 > git --version # 'git version 2.43.0' using GIT_ASKPASS to set credentials Jenkins Bruno > git fetch --tags --force --progress -- https://github.com/adamantine-sim/adamantine +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f c6d64a7b6447d17915532b3254cd87988fbf16ba # timeout=10 [Pipeline] withEnv [Pipeline] { [Pipeline] isUnix [Pipeline] withEnv [Pipeline] { [Pipeline] sh + docker inspect -f . rombur/adamantine-stack:latest . [Pipeline] } [Pipeline] // withEnv [Pipeline] withDockerContainer waffle_03 seems to be running inside container c3e00df1f7144af5327c0036cc8bf4478bd78552ed1b82c7a130605c1dd63855 $ docker run -t -d -u 0:0 -w /var/jenkins/workspace/adamantine-nightly --volumes-from c3e00df1f7144af5327c0036cc8bf4478bd78552ed1b82c7a130605c1dd63855 -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** rombur/adamantine-stack:latest cat $ docker top b18b7d4ffbf7140e166255232090717e57ca2131a79191f8a346cbeb91624c6a -eo pid,comm ERROR: The container started but didn't run the expected command. Please double check your ENTRYPOINT does execute the command passed as docker run argument, as required by official docker images (see https://github.com/docker-library/official-images#consistency for entrypoint consistency requirements). Alternatively you can force image entrypoint to be disabled by adding option `--entrypoint=''`. [Pipeline] { [Pipeline] withEnv [Pipeline] { [Pipeline] sh + rm -rf build + mkdir -p build [Pipeline] dir Running in /var/jenkins/workspace/adamantine-nightly/build [Pipeline] { [Pipeline] sh -- Using the deal.II-9.6.2 installation found at /opt/dealii -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_add_test.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_initialize_cached_variables.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_invoke_autopilot.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_pickup_tests.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_query_git_information.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_setup_target.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_shell_escape_option_groups.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_target_compile_flags.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_target_link_flags.cmake -- The CXX compiler identification is GNU 13.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /opt/trilinos/bin/nvcc_wrapper - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70.0") found components: chrono program_options timer unit_test_framework -- Build type: Debug -- Configuring done (15.4s) -- Generating done (3.6s) -- Build files have been written to: /var/jenkins/workspace/adamantine-nightly/build [Pipeline] sh + make -j8 [ 0%] Building CXX object source/CMakeFiles/Adamantine.dir/BodyForce.cc.o [ 2%] Copying bare_plate_L_da_aug_ref_data_0_0.csv [ 3%] Copying bare_plate_L_da.info [ 3%] Copying amr_test.info [ 5%] Copying bare_plate_L_da_aug_ref_data_0_1.csv [ 5%] Copying bare_plate_L_da_augmented.info [ 5%] Copying bare_plate_L_da_aug_ref_log.txt [ 5%] Copying analytical_1D_transient.py [ 5%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_da.info [ 5%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_da_aug_ref_data_0_0.csv [ 6%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_da_augmented.info [ 6%] Building CXX object source/CMakeFiles/Adamantine.dir/Boundary.cc.o [ 6%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_analytical_1D_transient.py [ 6%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_da_aug_ref_data_0_1.csv [ 6%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_amr_test.info [ 6%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_da_aug_ref_log.txt [ 6%] Copying bare_plate_L_ensemble.info [ 7%] Copying bare_plate_L_scan_path.txt [ 7%] Copying bare_plate_L_expt_data_0_1.csv [ 7%] Copying bare_plate_L_expt_data_0_0.csv [ 9%] Copying bare_plate_L_expt_log.txt [ 9%] Copying bare_plate_L_scan_path_fast.txt [ 9%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_ensemble.info [ 10%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_expt_data_0_1.csv [ 10%] Copying convective_bc_gold.txt [ 10%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_scan_path.txt [ 10%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_expt_data_0_0.csv [ 10%] Building CXX object source/CMakeFiles/Adamantine.dir/CubeHeatSource.cc.o [ 11%] Building CXX object source/CMakeFiles/Adamantine.dir/DataAssimilator.cc.o [ 11%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_expt_log.txt [ 11%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_scan_path_fast.txt [ 11%] Copying demo_316_short.info [ 11%] Copying demo_316_short_anisotropic.info [ 12%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_demo_316_short.info [ 12%] Copying demo_316_short_amr.info [ 12%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_convective_bc_gold.txt [ 12%] Building CXX object source/CMakeFiles/Adamantine.dir/ElectronBeamHeatSource.cc.o [ 12%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_demo_316_short_anisotropic.info [ 13%] Copying demo_316_short_scan_path.txt [ 13%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_demo_316_short_amr.info [ 13%] Copying demo_316_short_scan_path_amr.txt [ 14%] Copying experiment_log_test.txt [ 14%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_demo_316_short_scan_path.txt [ 14%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_demo_316_short_scan_path_amr.txt [ 15%] Building CXX object source/CMakeFiles/Adamantine.dir/GaussianHeatSource.cc.o [ 16%] Copying experimental_data_0_0.csv [ 16%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_experiment_log_test.txt [ 17%] Building CXX object source/CMakeFiles/Adamantine.dir/Geometry.cc.o [ 17%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_experimental_data_0_0.csv [ 17%] Building CXX object source/CMakeFiles/Adamantine.dir/GoldakHeatSource.cc.o [ 18%] Building CXX object source/CMakeFiles/Adamantine.dir/MaterialPropertyInstDev.cc.o [ 18%] Building CXX object source/CMakeFiles/Adamantine.dir/MaterialPropertyInstHost.cc.o [ 19%] Building CXX object source/CMakeFiles/Adamantine.dir/MechanicalOperator.cc.o [ 19%] Building CXX object source/CMakeFiles/Adamantine.dir/MechanicalPhysics.cc.o [ 20%] Building CXX object source/CMakeFiles/Adamantine.dir/Microstructure.cc.o [ 21%] Building CXX object source/CMakeFiles/Adamantine.dir/PointCloud.cc.o [ 21%] Building CXX object source/CMakeFiles/Adamantine.dir/PostProcessor.cc.o [ 22%] Building CXX object source/CMakeFiles/Adamantine.dir/Quaternion.cc.o [ 22%] Building CXX object source/CMakeFiles/Adamantine.dir/RayTracing.cc.o [ 23%] Building CXX object source/CMakeFiles/Adamantine.dir/ScanPath.cc.o [ 23%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalOperatorInstSHost.cc.o [ 24%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalOperatorInstSLHost.cc.o [ 25%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalOperatorInstSLPHost.cc.o [ 25%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalOperatorDeviceInstSDev.cc.o [ 26%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalOperatorDeviceInstSLDev.cc.o [ 26%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalOperatorDeviceInstSLPDev.cc.o [ 27%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalPhysicsInstSDev.cc.o [ 27%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalPhysicsInstSLDev.cc.o [ 28%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalPhysicsInstSLPDev.cc.o [ 29%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalPhysicsInstSHost.cc.o [ 29%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalPhysicsInstSLHost.cc.o [ 30%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalPhysicsInstSLPHost.cc.o [ 30%] Building CXX object source/CMakeFiles/Adamantine.dir/Timer.cc.o [ 31%] Building CXX object source/CMakeFiles/Adamantine.dir/connected_components.cc.o [ 31%] Building CXX object source/CMakeFiles/Adamantine.dir/ensemble_management.cc.o [ 32%] Building CXX object source/CMakeFiles/Adamantine.dir/experimental_data_utils.cc.o [ 33%] Building CXX object source/CMakeFiles/Adamantine.dir/material_deposition.cc.o [ 33%] Building CXX object source/CMakeFiles/Adamantine.dir/validate_input_database.cc.o [ 33%] Copying extruded_cube.msh [ 33%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_extruded_cube.msh [ 34%] Copying hexahedra.msh [ 34%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_hexahedra.msh [ 35%] Copying five_axis.info [ 35%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_five_axis.info [ 35%] Copying five_axis_scan_path.txt [ 36%] Copying HourGlass_AOP.info [ 36%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_five_axis_scan_path.txt [ 36%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_HourGlass_AOP.info [ 36%] Copying HourGlass_AOP.vtk [ 37%] Copying HourGlass_AOP_scan_path.txt [ 37%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_HourGlass_AOP.vtk [ 37%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_HourGlass_AOP_scan_path.txt [ 37%] Copying integration_2d.info [ 38%] Copying integration_2d_ensemble.info [ 38%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_2d.info [ 39%] Copying integration_2d_gold.txt [ 39%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_2d_ensemble.info [ 39%] Copying integration_2d_units.info [ 39%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_2d_gold.txt [ 39%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_2d_units.info [ 40%] Copying integration_3d_gold.txt [ 40%] Copying integration_3d_gold_0.txt [ 40%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold.txt [ 40%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold_0.txt [ 41%] Copying integration_3d_gold_1.txt [ 41%] Copying integration_3d_gold_five_axis.txt [ 41%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold_1.txt [ 41%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold_five_axis.txt [ 42%] Copying integration_3d_gold_five_axis_0.txt [ 43%] Copying integration_3d_gold_five_axis_1.txt [ 43%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold_five_axis_0.txt [ 43%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold_five_axis_1.txt [ 43%] Copying integration_3d_gold_short.txt [ 44%] Copying integration_3d_gold_short_0.txt [ 44%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold_short.txt [ 44%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold_short_0.txt [ 44%] Copying integration_3d_gold_short_1.txt [ 45%] Copying integration_da_add_material.info [ 45%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold_short_1.txt [ 45%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_da_add_material.info [ 45%] Copying integration_da_add_material_expt_log.txt [ 46%] Copying integration_da_add_material_expt_pc_0_0.csv [ 46%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_da_add_material_expt_log.txt [ 46%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_da_add_material_expt_pc_0_0.csv [ 47%] Copying integration_da_add_material_expt_ray_0_0.csv [ 47%] Copying integration_da_add_material_sp.txt [ 47%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_da_add_material_expt_ray_0_0.csv [ 47%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_da_add_material_sp.txt [ 48%] Copying material_deposition_2d.txt [ 48%] Copying material_deposition_3d.txt [ 48%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_material_deposition_3d.txt [ 48%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_material_deposition_2d.txt [ 49%] Copying material_path_test_material_deposition.txt [ 50%] Copying material_property_polynomial.info [ 50%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_material_path_test_material_deposition.txt [ 50%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_material_property_polynomial.info [ 50%] Copying material_property_table.info [ 51%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_material_property_table.info [ 51%] Copying microstructure_G_R_gold_1.txt [ 51%] Copying microstructure_G_R_gold_2.txt [ 51%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_microstructure_G_R_gold_1.txt [ 51%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_microstructure_G_R_gold_2.txt [ 52%] Copying rays_cam-0-0_test_full.csv [ 52%] Copying raytracing_experimental_data_0_0.csv [ 52%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_raytracing_experimental_data_0_0.csv [ 53%] Copying raytracing_non_AA_cells-0-0.csv [ 53%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_rays_cam-0-0_test_full.csv [ 53%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_raytracing_non_AA_cells-0-0.csv [ 54%] Copying scan_path.txt [ 54%] Copying scan_path_5_axis.txt [ 54%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path_5_axis.txt [ 54%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path.txt [ 55%] Copying scan_path_diagonal.txt [ 55%] Copying scan_path_arcs.txt [ 55%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path_arcs.txt [ 55%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path_diagonal.txt [ 56%] Copying scan_path_L.txt [ 56%] Copying scan_path_event_series.inp [ 56%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path_event_series.inp [ 56%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path_L.txt [ 58%] Copying scan_path_test_thermal_physics.txt [ 58%] Copying scan_path_layers.txt [ 58%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path_layers.txt [ 58%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path_test_thermal_physics.txt [ 58%] Copying scan_path_units.txt [ 58%] Copying Simple_3D_ring.stl [ 58%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path_units.txt [ 58%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_Simple_3D_ring.stl [ 58%] Copying thermoelastic_bare_plate_add_material_scan_path.txt [ 59%] Copying thermoelastic_bare_plate.info [ 59%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_thermoelastic_bare_plate_add_material_scan_path.txt [ 59%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_thermoelastic_bare_plate.info [ 60%] Copying thermoelastic_bare_plate_scan_path.txt [ 60%] Copying within_stl_gold.txt [ 60%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_within_stl_gold.txt [ 60%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_thermoelastic_bare_plate_scan_path.txt [ 60%] Built target Adamantine [ 61%] Building CXX object tests/CMakeFiles/test_experimental_data.dir/test_experimental_data.cc.o [ 61%] Building CXX object tests/CMakeFiles/test_integration_da.dir/test_integration_da.cc.o [ 61%] Building CXX object applications/CMakeFiles/adamantine.dir/adamantine.cc.o [ 61%] Building CXX object tests/CMakeFiles/test_closest_source_point_adaptation.dir/test_closest_source_point_adaptation.cc.o [ 62%] Building CXX object applications/CMakeFiles/activation_visualizer.dir/activation_visualizer.cc.o [ 63%] Building CXX object 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[ 70%] Linking CXX executable ../bin/test_geometry [ 71%] Linking CXX executable ../bin/test_integration_da [ 71%] Built target activation_visualizer [ 71%] Building CXX object tests/CMakeFiles/test_mechanical_operator.dir/test_mechanical_operator.cc.o [ 71%] Built target test_data_assimilator [ 71%] Built target test_geometry [ 71%] Building CXX object tests/CMakeFiles/test_mechanical_physics.dir/test_mechanical_physics.cc.o [ 72%] Building CXX object tests/CMakeFiles/test_post_processor.dir/test_post_processor.cc.o [ 72%] Built target test_integration_da [ 73%] Building CXX object tests/CMakeFiles/test_quaternion.dir/test_quaternion.cc.o [ 74%] Linking CXX executable ../bin/test_material_property_device [ 74%] Linking CXX executable ../bin/test_material_property [ 75%] Linking CXX executable ../bin/test_mechanical_operator [ 75%] Linking CXX executable ../bin/test_quaternion [ 76%] Linking CXX executable ../bin/test_integration_3d_device [ 76%] Built target test_material_property [ 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../bin/test_ensemble_management [ 98%] Built target test_integration_thermoelastic [ 98%] Built target test_ensemble_management [ 98%] Linking CXX executable ../bin/test_material_deposition [ 99%] Linking CXX executable ../bin/test_microstructure [100%] Linking CXX executable ../bin/test_thermal_physics [100%] Built target test_material_deposition [100%] Built target test_microstructure [100%] Built target test_thermal_physics [Pipeline] sh + ctest -j4 -V --timeout 7200 --no-compress-output -R test_ -T Test UpdateCTestConfiguration from :/var/jenkins/workspace/adamantine-nightly/build/DartConfiguration.tcl Parse Config file:/var/jenkins/workspace/adamantine-nightly/build/DartConfiguration.tcl Site: b18b7d4ffbf7 Build name: Linux-nvcc_wrapper Create new tag: 20261108-0611 - Experimental UpdateCTestConfiguration from :/var/jenkins/workspace/adamantine-nightly/build/DartConfiguration.tcl Parse Config file:/var/jenkins/workspace/adamantine-nightly/build/DartConfiguration.tcl Test project /var/jenkins/workspace/adamantine-nightly/build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_integration_da_1 1: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_da" 1: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 1: Test timeout computed to be: 7200 test 2 Start 2: test_integration_da_2 2: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_da" 2: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 2: Test timeout computed to be: 7200 test 5 Start 5: test_closest_source_point_adaptation_1 5: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_closest_source_point_adaptation" 5: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 5: Test timeout computed to be: 7200 2: Running 3 test cases... 2: Entering test module "Integration_Data_Assimilation" 2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation" 2: Running 3 test cases... 2: Entering test module "Integration_Data_Assimilation" 2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation" 1: Running 3 test cases... 1: Entering test module "Integration_Data_Assimilation" 1: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation" 5: Running 1 test case... 5: Entering test module "ClosestSourcePointAdaptation" 5: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation" 2: Reading the experimental log file... 2: Done. Log entries found for 1 camera(s), with 2 frame(s). 2: Starting the main time stepping loop... 1: Reading the experimental log file... 1: Done. Log entries found for 1 camera(s), with 2 frame(s). 1: Starting the main time stepping loop... 2: Rank: 1 | Old parameters for member 2: 2: Rank: 1 | Number expt sites mapped to DOFs: 1 2: 10% completed 1: 10% completed 2: 20% completed 2: 30% completed 1: 20% completed 2: 40% completed 2: Performing data assimilation at time 0.0211... 2: Rank: 0 | Old parameters for member 0: 2: Rank: 0 | Old parameters for member 1: 2: Rank: 0 | Number expt sites mapped to DOFs: 1 1: 30% completed 5: 5: *** No errors detected 5: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 32132350us 5: Leaving test module "ClosestSourcePointAdaptation"; testing time: 32132397us 5:  1/50 Test #5: test_closest_source_point_adaptation_1 ... Passed 37.03 sec test 9 Start 9: test_data_assimilator_1 9: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_data_assimilator" 9: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 9: Test timeout computed to be: 7200 2: Getting the perturbed innovation... 2: Applying the Kalman gain... 1: 40% completed 9: Running 1 test case... 9: Entering test module "DataAssimilator" 9: /var/jenkins/workspace/adamantine-nightly/tests/test_data_assimilator.cc(948): Entering test case "data_assimilator" 9: Getting the perturbed innovation... 9: Applying the Kalman gain... 9: Updating the ensemble members... 9: Getting the perturbed innovation... 9: Applying the Kalman gain... 9: Updating the ensemble members... 9: /var/jenkins/workspace/adamantine-nightly/tests/test_data_assimilator.cc(948): Leaving test case "data_assimilator"; testing time: 1026729us 9: Leaving test module "DataAssimilator"; testing time: 1026765us 9:  9: *** No errors detected 2: Updating the ensemble members... 2: Done. 9:  2/50 Test #9: test_data_assimilator_1 .................. Passed 5.49 sec test 10 Start 10: test_experimental_data_1 10: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_experimental_data" 10: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 10: Test timeout computed to be: 7200 1: Performing data assimilation at time 0.0211... 1: Rank: 0 | Old parameters for member 0: 1: Rank: 0 | Old parameters for member 1: 1: Rank: 0 | Old parameters for member 2: 1: Rank: 0 | Number expt sites mapped to DOFs: 1 2: Rank: 1 | Old parameters for member 2: 2: Rank: 1 | Number expt sites mapped to DOFs: 1 10: Running 6 test cases... 10: Entering test module "ExperimentaData" 10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(22): Entering test case "read_experimental_data_point_cloud_from_file" 10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(22): Leaving test case "read_experimental_data_point_cloud_from_file"; testing time: 231296us 10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(75): Entering test case "set_vector_with_experimental_data_point_cloud" 10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(75): Leaving test case "set_vector_with_experimental_data_point_cloud"; testing time: 149953us 10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(138): Entering test case "read_experimental_data_ray_tracing_from_file" 10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(138): Leaving test case "read_experimental_data_ray_tracing_from_file"; testing time: 170330us 10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(199): Entering test case "timestamp" 10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(199): Leaving test case "timestamp"; testing time: 23813us 10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(225): Entering test case "project_ray_data_on_mesh" 2: 50% completed 1: Getting the perturbed innovation... 1: Applying the Kalman gain... 2: 60% completed 1: Updating the ensemble members... 1: Done. 2: Performing data assimilation at time 0.0316... 2: Rank: 0 | Old parameters for member 0: 2: Rank: 0 | Old parameters for member 1: 2: Rank: 0 | Number expt sites mapped to DOFs: 1 1: 50% completed 2: Getting the perturbed innovation... 2: Applying the Kalman gain... 2: Updating the ensemble members... 2: Done. 1: 60% completed 2: 70% completed 1: Performing data assimilation at time 0.0316... 1: Rank: 0 | Old parameters for member 0: 1: Rank: 0 | Old parameters for member 1: 1: Rank: 0 | Old parameters for member 2: 1: Rank: 0 | Number expt sites mapped to DOFs: 1 2: 80% completed 1: Getting the perturbed innovation... 1: Applying the Kalman gain... 2: 90% completed 1: Updating the ensemble members... 1: Done. 2: 100% completed 2: Reading the experimental log file... 2: Done. Log entries found for 1 camera(s), with 2 frame(s). 2: Starting the main time stepping loop... 2: Reading the experimental log file... 2: Done. Log entries found for 1 camera(s), with 2 frame(s). 2: Starting the main time stepping loop... 1: 70% completed 2: 10% completed 2: 20% completed 2: 30% completed 2: 40% completed 1: 80% completed 2: Performing data assimilation at time 0.0211... 2: Rank: 0 | Old parameters for member 0: 2: Rank: 0 | Old parameters for member 1: 2: Rank: 0 | Old parameters for member 2: 2: Rank: 0 | Number expt sites mapped to DOFs: 1 2: 10% completed 2: Getting the perturbed innovation... 2: Applying the Kalman gain... 2: Updating the ensemble members... 2: Done. 2: 50% completed 1: 90% completed 2: 20% completed 2: 60% completed 2: Performing data assimilation at time 0.0316... 2: Rank: 0 | Old parameters for member 0: 2: Rank: 0 | Old parameters for member 1: 2: Rank: 0 | Old parameters for member 2: 2: Rank: 0 | Number expt sites mapped to DOFs: 1 2: Getting the perturbed innovation... 2: Applying the Kalman gain... 2: 30% completed 2: Updating the ensemble members... 2: Done. 1: 100% completed 2: 70% completed 1: Reading the experimental log file... 1: Done. Log entries found for 1 camera(s), with 2 frame(s). 2: 80% completed 1: Starting the main time stepping loop... 2: 40% completed 2: 90% completed 2: Performing data assimilation at time 0.0211... 2: Rank: 0 | Old parameters for member 0: 2: Rank: 0 | Old parameters for member 1: 2: Rank: 0 | Old parameters for member 2: 2: Rank: 0 | Number expt sites mapped to DOFs: 1 2: 100% completed 2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 141299212us 2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material" 10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(225): Leaving test case "project_ray_data_on_mesh"; testing time: 102321758us 10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(302): Entering test case "project_ray_data_on_nonaligned_mesh" 10: 10: *** No errors detected 10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(302): Leaving test case "project_ray_data_on_nonaligned_mesh"; testing time: 277937us 10: Leaving test module "ExperimentaData"; testing time: 103176201us 2: Getting the perturbed innovation... 2: Applying the Kalman gain... 1: 10% completed 10:  3/50 Test #10: test_experimental_data_1 ................. Passed 107.09 sec test 11 Start 11: test_geometry_1 11: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_geometry" 11: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 11: Test timeout computed to be: 7200 11: Running 6 test cases... 11: Entering test module "Geometry" 11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(61): Entering test case "geometry_2D" 11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(61): Leaving test case "geometry_2D"; testing time: 67698us 11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(86): Entering test case "geometry_3D" 11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(86): Leaving test case "geometry_3D"; testing time: 96177us 11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(113): Entering test case "geometry_shifted_origin" 11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(113): Leaving test case "geometry_shifted_origin"; testing time: 119108us 11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(148): Entering test case "gmsh" 11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(148): Leaving test case "gmsh"; testing time: 377459us 11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(171): Entering test case "read_stl" 11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(171): Leaving test case "read_stl"; testing time: 132224us 11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(232): Entering test case "geometry_stl_mesh" 11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(232): Leaving test case "geometry_stl_mesh"; testing time: 77428us 11: Leaving test module "Geometry"; testing time: 871442us 11:  11: *** No errors detected 2: Updating the ensemble members... 2: Done. 11:  4/50 Test #11: test_geometry_1 .......................... Passed 4.37 sec test 12 Start 12: test_heat_source_1 12: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_heat_source" 12: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 12: Test timeout computed to be: 7200 1: 20% completed 12: Running 6 test cases... 12: Entering test module "HeatSource" 12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(104): Entering test case "gaussian_heat_source_value_2d" 12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(104): Leaving test case "gaussian_heat_source_value_2d"; testing time: 33035us 12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(109): Entering test case "gaussian_heat_source_value_3d" 12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(109): Leaving test case "gaussian_heat_source_value_3d"; testing time: 242us 12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(114): Entering test case "heat_source_value_2d" 12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(114): Leaving test case "heat_source_value_2d"; testing time: 301us 12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(190): Entering test case "heat_source_vectorized_value_2d" 12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(190): Leaving test case "heat_source_vectorized_value_2d"; testing time: 270us 12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(315): Entering test case "heat_source_value_3d" 12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(315): Leaving test case "heat_source_value_3d"; testing time: 296us 12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(381): Entering test case "heat_source_vectorized_value_3d" 12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(381): Leaving test case "heat_source_vectorized_value_3d"; testing time: 266us 12: Leaving test module "HeatSource"; testing time: 35672us 12:  12: *** No errors detected 12:  5/50 Test #12: test_heat_source_1 ....................... Passed 3.81 sec test 13 Start 13: test_integration_3d_device_1 13: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_3d_device" 13: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 13: Test timeout computed to be: 7200 13: Running 2 test cases... 13: Entering test module "Integration_3D_Device" 13: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_device.cc(19): Entering test case "integration_3D_device" 2: 50% completed 1: 30% completed 1: 40% completed 2: 60% completed 1: Performing data assimilation at time 0.0211... 1: Rank: 0 | Old parameters for member 0: 1: Rank: 0 | Old parameters for member 1: 1: Rank: 0 | Old parameters for member 2: 1: Rank: 0 | Number expt sites mapped to DOFs: 1 2: Performing data assimilation at time 0.0316... 2: Rank: 0 | Old parameters for member 0: 2: Rank: 0 | Old parameters for member 1: 2: Rank: 0 | Old parameters for member 2: 2: Rank: 0 | Number expt sites mapped to DOFs: 1 1: Getting the perturbed innovation... 1: Applying the Kalman gain... 2: Getting the perturbed innovation... 2: Applying the Kalman gain... 1: Updating the ensemble members... 1: Done. 2: Updating the ensemble members... 2: Done. 1: 50% completed 2: 70% completed 1: 60% completed 2: 80% completed 1: Performing data assimilation at time 0.0316... 1: Rank: 0 | Old parameters for member 0: 1: Rank: 0 | Old parameters for member 1: 1: Rank: 0 | Old parameters for member 2: 1: Rank: 0 | Number expt sites mapped to DOFs: 1 2: 90% completed 1: Getting the perturbed innovation... 1: Applying the Kalman gain... 1: Updating the ensemble members... 1: Done. 2: 100% completed 2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 229149929us 2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material" 2: Reading the experimental log file... 2: Done. Log entries found for 1 camera(s), with 1 frame(s). 2: Starting the main time stepping loop... 2: Rank: 1 | Old parameters for member 2: 2: Rank: 1 | Number expt sites mapped to DOFs: 1 2: 10% completed 2: 20% completed 1: 70% completed 2: 30% completed 2: 40% completed 2: 50% completed 2: Performing data assimilation at time 0.12... 2: Rank: 0 | Old parameters for member 0: 2: Rank: 0 | Old parameters for member 1: 2: Rank: 0 | Number expt sites mapped to DOFs: 1 2: Getting the perturbed innovation... 2: Applying the Kalman gain... 2: Updating the ensemble members... 2: Done. 2: 60% completed 2: 70% completed 2: 80% completed 2: 90% completed 2: 100% completed 2: Reading the experimental log file... 2: Done. Log entries found for 1 camera(s), with 1 frame(s). 2: Starting the main time stepping loop... 2: 10% completed 2: 20% completed 2: 30% completed 2: 40% completed 2: 50% completed 2: Performing data assimilation at time 0.12... 2: Rank: 0 | Old parameters for member 0: 2: Rank: 0 | Old parameters for member 1: 2: Rank: 0 | Old parameters for member 2: 2: Rank: 0 | Number expt sites mapped to DOFs: 1 2: Getting the perturbed innovation... 2: Applying the Kalman gain... 2: Updating the ensemble members... 2: Done. 2: 60% completed 2: 70% completed 2: 80% completed 2: 90% completed 2: Reading the experimental log file... 2: Done. Log entries found for 1 camera(s), with 1 frame(s). 1: 80% completed 2: 100% completed 2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 98796478us 2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material" 2: Starting the main time stepping loop... 2: 10% completed 2: 20% completed 2: 30% completed 2: 40% completed 2: 50% completed 2: Performing data assimilation at time 0.12... 2: Rank: 0 | Old parameters for member 0: 2: Rank: 0 | Old parameters for member 1: 2: Rank: 0 | Old parameters for member 2: 2: Rank: 0 | Number expt sites mapped to DOFs: 1 2: Getting the perturbed innovation... 2: Applying the Kalman gain... 2: Updating the ensemble members... 2: Done. 2: 60% completed 2: 70% completed 2: 80% completed 1: 90% completed 2: 90% completed 2: 100% completed 2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 21095498us 2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material" 2: Reading the experimental log file... 2: Done. Log entries found for 1 camera(s), with 1 frame(s). 2: Starting the main time stepping loop... 2: Rank: 1 | Old parameters for member 2: 2: Rank: 1 | Number expt sites mapped to DOFs: 1 2: 10% completed 2: 20% completed 2: 30% completed 2: 40% completed 2: 50% completed 2: Performing data assimilation at time 0.12... 2: Rank: 0 | Old parameters for member 0: 2: Rank: 0 | Old parameters for member 1: 2: Rank: 0 | Number expt sites mapped to DOFs: 1 2: Getting the perturbed innovation... 2: Applying the Kalman gain... 2: Updating the ensemble members... 2: Done. 2: 60% completed 2: 70% completed 1: 100% completed 2: 80% completed 2: 90% completed 1: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 257568543us 1: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material" 2: 100% completed 1: Reading the experimental log file... 1: Done. Log entries found for 1 camera(s), with 1 frame(s). 2: Reading the experimental log file... 2: Done. Log entries found for 1 camera(s), with 1 frame(s). 2: Starting the main time stepping loop... 1: Starting the main time stepping loop... 2: 10% completed 2: 20% completed 2: 30% completed 2: 40% completed 2: 50% completed 2: Performing data assimilation at time 0.12... 2: Rank: 0 | Old parameters for member 0: 2: Rank: 0 | Old parameters for member 1: 2: Rank: 0 | Old parameters for member 2: 2: Rank: 0 | Number expt sites mapped to DOFs: 1 2: Getting the perturbed innovation... 2: Applying the Kalman gain... 2: Reading the experimental log file... 2: Done. Log entries found for 1 camera(s), with 1 frame(s). 2: Updating the ensemble members... 2: Done. 2: 60% completed 2: 70% completed 2: 80% completed 2: 90% completed 2: Starting the main time stepping loop... 1: 10% completed 2: 100% completed 2: 2: *** No errors detected 2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 20787557us 2: Leaving test module "Integration_Data_Assimilation"; testing time: 260883405us 1: 20% completed 1: 30% completed 1: 40% completed 2: 10% completed 1: 50% completed 2: 20% completed 1: Performing data assimilation at time 0.12... 1: Rank: 0 | Old parameters for member 0: 1: Rank: 0 | Old parameters for member 1: 1: Rank: 0 | Old parameters for member 2: 1: Rank: 0 | Number expt sites mapped to DOFs: 1 2: 30% completed 1: Getting the perturbed innovation... 1: Applying the Kalman gain... 2: 40% completed 1: Updating the ensemble members... 1: Done. 1: 60% completed 2: 50% completed 1: 70% completed 2: Performing data assimilation at time 0.12... 2: Rank: 0 | Old parameters for member 0: 2: Rank: 0 | Old parameters for member 1: 2: Rank: 0 | Old parameters for member 2: 2: Rank: 0 | Number expt sites mapped to DOFs: 1 1: 80% completed 2: Getting the perturbed innovation... 2: Applying the Kalman gain... 1: 90% completed 2: Updating the ensemble members... 2: Done. 2: 60% completed 2: 70% completed 2: 80% completed 2: 90% completed 1: 100% completed 2: 100% completed 2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 17794776us 2: Leaving test module "Integration_Data_Assimilation"; testing time: 268040329us 2:  2: *** No errors detected 1: Reading the experimental log file... 1: Done. Log entries found for 1 camera(s), with 1 frame(s). 2:  6/50 Test #2: test_integration_da_2 .................... Passed 272.66 sec test 6 Start 6: test_closest_source_point_adaptation_2 6: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_closest_source_point_adaptation" 6: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 6: Test timeout computed to be: 7200 1: Starting the main time stepping loop... 1: 10% completed 1: 20% completed 6: Running 1 test case... 6: Entering test module "ClosestSourcePointAdaptation" 6: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation" 1: 30% completed 6: Running 1 test case... 6: Entering test module "ClosestSourcePointAdaptation" 6: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation" 1: 40% completed 1: 50% completed 1: Performing data assimilation at time 0.12... 1: Rank: 0 | Old parameters for member 0: 1: Rank: 0 | Old parameters for member 1: 1: Rank: 0 | Old parameters for member 2: 1: Rank: 0 | Number expt sites mapped to DOFs: 1 1: Getting the perturbed innovation... 1: Applying the Kalman gain... 1: Updating the ensemble members... 1: Done. 1: 60% completed 1: 70% completed 1: 80% completed 1: 90% completed 1: 100% completed 1: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 20217273us 1: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material" 1: Reading the experimental log file... 1: Done. Log entries found for 1 camera(s), with 1 frame(s). 1: Starting the main time stepping loop... 1: 10% completed 13: 10% completed 1: 20% completed 1: 30% completed 1: 40% completed 1: 50% completed 1: Performing data assimilation at time 0.12... 1: Rank: 0 | Old parameters for member 0: 1: Rank: 0 | Old parameters for member 1: 1: Rank: 0 | Old parameters for member 2: 1: Rank: 0 | Number expt sites mapped to DOFs: 1 1: Getting the perturbed innovation... 1: Applying the Kalman gain... 1: Updating the ensemble members... 1: Done. 1: 60% completed 1: 70% completed 1: 80% completed 1: 90% completed 6: 6: *** No errors detected 6: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 19030708us 6: Leaving test module "ClosestSourcePointAdaptation"; testing time: 19030770us 6: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 18864210us 6: Leaving test module "ClosestSourcePointAdaptation"; testing time: 18864258us 6:  6: *** No errors detected 6:  7/50 Test #6: test_closest_source_point_adaptation_2 ... Passed 21.36 sec test 14 Start 14: test_material_property_1 14: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_material_property" 14: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 14: Test timeout computed to be: 7200 test 15 Start 15: test_material_property_device_1 15: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_material_property_device" 15: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 15: Test timeout computed to be: 7200 1: 100% completed 15: Running 4 test cases... 15: Entering test module "MaterialPropertyDevice" 15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(13): Entering test case "material_property_device" 1: Reading the experimental log file... 1: Done. Log entries found for 1 camera(s), with 1 frame(s). 15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(13): Leaving test case "material_property_device"; testing time: 197636us 15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(18): Entering test case "ratios_device" 14: Running 4 test cases... 14: Entering test module "MaterialProperty" 14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(13): Entering test case "material_property_host" 14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(13): Leaving test case "material_property_host"; testing time: 105163us 14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(18): Entering test case "ratios_host" 15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(18): Leaving test case "ratios_device"; testing time: 145139us 15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(20): Entering test case "material_property_table_device" 1: Starting the main time stepping loop... 14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(18): Leaving test case "ratios_host"; testing time: 141657us 14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(20): Entering test case "material_property_table_host" 15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(20): Leaving test case "material_property_table_device"; testing time: 123608us 15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(25): Entering test case "material_property_polynomials_device" 14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(20): Leaving test case "material_property_table_host"; testing time: 98217us 14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(25): Entering test case "material_property_polynomials_host" 15: 15: *** No errors detected 15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(25): Leaving test case "material_property_polynomials_device"; testing time: 97941us 15: Leaving test module "MaterialPropertyDevice"; testing time: 564462us 14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(25): Leaving test case "material_property_polynomials_host"; testing time: 124332us 14: Leaving test module "MaterialProperty"; testing time: 469531us 14:  14: *** No errors detected 15:  8/50 Test #15: test_material_property_device_1 .......... Passed 3.36 sec test 16 Start 16: test_mechanical_operator_1 16: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_mechanical_operator" 16: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 16: Test timeout computed to be: 7200 14:  9/50 Test #14: test_material_property_1 ................. Passed 3.48 sec test 17 Start 17: test_mechanical_physics_1 17: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_mechanical_physics" 17: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 17: Test timeout computed to be: 7200 1: 10% completed 1: 20% completed 1: 30% completed 17: Running 9 test cases... 17: Entering test module "MechanicalPhysics" 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(198): Entering test case "elastostatic" 1: 40% completed 16: Running 3 test cases... 16: Entering test module "MechanicalOperator" 16: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_operator.cc(72): Entering test case "elastostatic" 1: 50% completed 1: Performing data assimilation at time 0.12... 1: Rank: 0 | Old parameters for member 0: 1: Rank: 0 | Old parameters for member 1: 1: Rank: 0 | Old parameters for member 2: 1: Rank: 0 | Number expt sites mapped to DOFs: 1 1: Getting the perturbed innovation... 1: Applying the Kalman gain... 1: Updating the ensemble members... 1: Done. 1: 60% completed 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(198): Leaving test case "elastostatic"; testing time: 3063364us 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(276): Entering test case "elastoplastic_residual" 1: 70% completed 1: 80% completed 1: 90% completed 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(276): Leaving test case "elastoplastic_residual"; testing time: 2408795us 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(397): Entering test case "fe_nothing" 1: 100% completed 1: 1: *** No errors detected 1: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 25588887us 1: Leaving test module "Integration_Data_Assimilation"; testing time: 303374828us 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(397): Leaving test case "fe_nothing"; testing time: 2762227us 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(664): Entering test case "thermoelastic_eshelby" 1:  10/50 Test #1: test_integration_da_1 .................... Passed 308.27 sec test 18 Start 18: test_post_processor_1 18: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_post_processor" 18: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 18: Test timeout computed to be: 7200 18: Running 2 test cases... 18: Entering test module "PostProcessor" 18: /var/jenkins/workspace/adamantine-nightly/tests/test_post_processor.cc(27): Entering test case "thermal_post_processor" 18: /var/jenkins/workspace/adamantine-nightly/tests/test_post_processor.cc(27): Leaving test case "thermal_post_processor"; testing time: 1283669us 18: /var/jenkins/workspace/adamantine-nightly/tests/test_post_processor.cc(149): Entering test case "mechanical_post_processor" 18:  18: *** No errors detected 18: /var/jenkins/workspace/adamantine-nightly/tests/test_post_processor.cc(149): Leaving test case "mechanical_post_processor"; testing time: 18076155us 18: Leaving test module "PostProcessor"; testing time: 19359888us 18:  11/50 Test #18: test_post_processor_1 .................... Passed 22.86 sec test 19 Start 19: test_quaternion_1 19: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_quaternion" 19: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 19: Test timeout computed to be: 7200 19: Running 1 test case... 19: Entering test module "Quaternion" 19: /var/jenkins/workspace/adamantine-nightly/tests/test_quaternion.cc(11): Entering test case "rotation" 19: /var/jenkins/workspace/adamantine-nightly/tests/test_quaternion.cc(11): Leaving test case "rotation"; testing time: 153us 19: Leaving test module "Quaternion"; testing time: 174us 19:  19: *** No errors detected 19:  12/50 Test #19: test_quaternion_1 ........................ Passed 4.07 sec test 20 Start 20: test_scan_path_1 20: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_scan_path" 20: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 20: Test timeout computed to be: 7200 20: Running 3 test cases... 20: Entering test module "ScanPath" 20: /var/jenkins/workspace/adamantine-nightly/tests/test_scan_path.cc(36): Entering test case "scan_path" 20: /var/jenkins/workspace/adamantine-nightly/tests/test_scan_path.cc(36): Leaving test case "scan_path"; testing time: 39929us 20: /var/jenkins/workspace/adamantine-nightly/tests/test_scan_path.cc(78): Entering test case "scan_path_location" 20: /var/jenkins/workspace/adamantine-nightly/tests/test_scan_path.cc(78): Leaving test case "scan_path_location"; testing time: 184us 20: /var/jenkins/workspace/adamantine-nightly/tests/test_scan_path.cc(106): Entering test case "five_axis" 20: /var/jenkins/workspace/adamantine-nightly/tests/test_scan_path.cc(106): Leaving test case "five_axis"; testing time: 37379us 20: Leaving test module "ScanPath"; testing time: 78327us 20:  20: *** No errors detected 20:  13/50 Test #20: test_scan_path_1 ......................... Passed 6.30 sec test 21 Start 21: test_thermal_operator_1 21: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_thermal_operator" 21: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 21: Test timeout computed to be: 7200 21: Running 6 test cases... 21: Entering test module "ThermalOperator" 21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(41): Entering test case "thermal_operator" 21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(41): Leaving test case "thermal_operator"; testing time: 658924us 21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(148): Entering test case "spmv" 21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(148): Leaving test case "spmv"; testing time: 994977us 21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(265): Entering test case "spmv_anisotropic" 21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(265): Leaving test case "spmv_anisotropic"; testing time: 959439us 21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(415): Entering test case "spmv_anisotropic_angle" 21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(415): Leaving test case "spmv_anisotropic_angle"; testing time: 3165128us 21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(580): Entering test case "spmv_rad" 16: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_operator.cc(72): Leaving test case "elastostatic"; testing time: 51572775us 16: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_operator.cc(302): Entering test case "thermoelastic" 21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(580): Leaving test case "spmv_rad"; testing time: 10706495us 21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(772): Entering test case "spmv_conv" 16: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_operator.cc(302): Leaving test case "thermoelastic"; testing time: 13176076us 16: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_operator.cc(393): Entering test case "jacobian" 16:  16: *** No errors detected 16: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_operator.cc(393): Leaving test case "jacobian"; testing time: 693300us 16: Leaving test module "MechanicalOperator"; testing time: 65443085us 16:  14/50 Test #16: test_mechanical_operator_1 ............... Passed 68.40 sec test 22 Start 22: test_thermal_operator_device_1 22: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_thermal_operator_device" 22: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 22: Test timeout computed to be: 7200 22: Running 4 test cases... 22: Entering test module "ThermalOperatorDevice" 22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(31): Entering test case "thermal_operator_dev" 22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(31): Leaving test case "thermal_operator_dev"; testing time: 469968us 22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(124): Entering test case "spmv" 22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(124): Leaving test case "spmv"; testing time: 402853us 22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(237): Entering test case "mf_spmv" 21: 21: *** No errors detected 21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(772): Leaving test case "spmv_conv"; testing time: 9206112us 21: Leaving test module "ThermalOperator"; testing time: 25693036us 21:  15/50 Test #21: test_thermal_operator_1 .................. Passed 29.04 sec test 23 Start 23: test_thermal_physics_device_1 23: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_thermal_physics_device" 23: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 23: Test timeout computed to be: 7200 22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(237): Leaving test case "mf_spmv"; testing time: 3506377us 22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(375): Entering test case "spmv_anisotropic_angle" 23: Running 4 test cases... 23: Entering test module "ThermalPhysicsDevice" 23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(13): Entering test case "thermal_2d_explicit_device" 23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(13): Leaving test case "thermal_2d_explicit_device"; testing time: 820424us 23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(26): Entering test case "thermal_2d_manufactured_solution_device" 22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(375): Leaving test case "spmv_anisotropic_angle"; testing time: 1346668us 22: Leaving test module "ThermalOperatorDevice"; testing time: 5727158us 22:  22: *** No errors detected 22:  16/50 Test #22: test_thermal_operator_device_1 ........... Passed 9.27 sec test 24 Start 24: test_timer_1 24: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_timer" 24: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 24: Test timeout computed to be: 7200 23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(26): Leaving test case "thermal_2d_manufactured_solution_device"; testing time: 502499us 23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(31): Entering test case "initial_temperature_device" 23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(31): Leaving test case "initial_temperature_device"; testing time: 223567us 23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(36): Entering test case "energy_conservation_device" 24: Running 1 test case... 24: Entering test module "Timer" 24: /var/jenkins/workspace/adamantine-nightly/tests/test_timer.cc(15): Entering test case "test_timer" 24: 24: *** No errors detected 24: /var/jenkins/workspace/adamantine-nightly/tests/test_timer.cc(15): Leaving test case "test_timer"; testing time: 612170us 24: Leaving test module "Timer"; testing time: 612231us 24:  17/50 Test #24: test_timer_1 ............................. Passed 4.79 sec test 25 Start 25: test_utils_1 25: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_utils" 25: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 25: Test timeout computed to be: 7200 25: Running 1 test case... 25: Entering test module "utils" 25: /var/jenkins/workspace/adamantine-nightly/tests/test_utils.cc(11): Entering test case "utils" 25: /var/jenkins/workspace/adamantine-nightly/tests/test_utils.cc(11): Leaving test case "utils"; testing time: 38003us 25: Leaving test module "utils"; testing time: 38053us 25:  25: *** No errors detected 25:  18/50 Test #25: test_utils_1 ............................. Passed 3.44 sec test 26 Start 26: test_validate_input_database_1 26: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_validate_input_database" 26: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 26: Test timeout computed to be: 7200 26: Running 3 test cases... 26: Entering test module "validate_input_database" 26: /var/jenkins/workspace/adamantine-nightly/tests/test_validate_input_database.cc(14): Entering test case "expected_passes" 26: Test case expected_passes did not check any assertions 26: /var/jenkins/workspace/adamantine-nightly/tests/test_validate_input_database.cc(14): Leaving test case "expected_passes"; testing time: 1033us 26: /var/jenkins/workspace/adamantine-nightly/tests/test_validate_input_database.cc(55): Entering test case "parse_test_input_files" 26: Test case parse_test_input_files did not check any assertions 26: /var/jenkins/workspace/adamantine-nightly/tests/test_validate_input_database.cc(55): Leaving test case "parse_test_input_files"; testing time: 77423us 26: /var/jenkins/workspace/adamantine-nightly/tests/test_validate_input_database.cc(76): Entering test case "expected_failures" 26: /var/jenkins/workspace/adamantine-nightly/tests/test_validate_input_database.cc(76): Leaving test case "expected_failures"; testing time: 50363us 26: Leaving test module "validate_input_database"; testing time: 128966us 26:  26: *** No errors detected 26:  19/50 Test #26: test_validate_input_database_1 ........... Passed 5.64 sec test 27 Start 27: test_connected_components_1 27: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_connected_components" 27: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 27: Test timeout computed to be: 7200 27: Running 4 test cases... 27: Entering test module "Master Test Suite" 27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(44): Entering test case "connected_components" 13: 20% completed 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(664): Leaving test case "thermoelastic_eshelby"; testing time: 227753097us 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(692): Entering test case "elastoplastic_radial_return" 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(692): Leaving test case "elastoplastic_radial_return"; testing time: 1481806us 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(873): Entering test case "cell_data_transfer_refine_coarsen" 23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(36): Leaving test case "energy_conservation_device"; testing time: 163891530us 23: Leaving test module "ThermalPhysicsDevice"; testing time: 165438229us 23:  23: *** No errors detected 23:  20/50 Test #23: test_thermal_physics_device_1 ............ Passed 169.24 sec test 29 Start 29: test_integration_2d_1 29: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_2d" 29: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 29: Test timeout computed to be: 7200 29: Running 3 test cases... 29: Entering test module "Integration_2D" 29: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(19): Entering test case "integration_2D" 29: 10% completed 29: 20% completed 29: 30% completed 29: 40% completed 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(873): Leaving test case "cell_data_transfer_refine_coarsen"; testing time: 10531696us 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(991): Entering test case "activation_strain_for_newly_active_cells" 29: 50% completed 29: 60% completed 29: 70% completed 29: 80% completed 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(991): Leaving test case "activation_strain_for_newly_active_cells"; testing time: 1925193us 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(1133): Entering test case "thermoelastic_stress_uniform_heating" 29: 90% completed 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(1133): Leaving test case "thermoelastic_stress_uniform_heating"; testing time: 1220591us 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(1241): Entering test case "thermoelastoplastic_radial_return" 29: 100% completed 29: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(19): Leaving test case "integration_2D"; testing time: 9054878us 29: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(46): Entering test case "integration_2D_ensemble" 17:  17: *** No errors detected 17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(1241): Leaving test case "thermoelastoplastic_radial_return"; testing time: 2574471us 17: Leaving test module "MechanicalPhysics"; testing time: 253722788us 17:  21/50 Test #17: test_mechanical_physics_1 ................ Passed 256.51 sec test 31 Start 31: test_integration_2d_device_1 31: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_2d_device" 31: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 31: Test timeout computed to be: 7200 29: Starting the main time stepping loop... 31: Running 1 test case... 31: Entering test module "Integration_2D_Device" 31: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d_device.cc(19): Entering test case "intregation_2D_device" 31: 10% completed 29: 10% completed 31: 20% completed 31: 30% completed 29: 20% completed 31: 40% completed 29: 30% completed 31: 50% completed 29: 40% completed 31: 60% completed 31: 70% completed 31: 80% completed 31: 90% completed 31: 100% completed 31: 31: *** No errors detected 31: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d_device.cc(19): Leaving test case "intregation_2D_device"; testing time: 13155679us 31: Leaving test module "Integration_2D_Device"; testing time: 13156035us 29: 50% completed 31:  22/50 Test #31: test_integration_2d_device_1 ............. Passed 15.95 sec test 33 Start 33: test_integration_3d_1 33: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_3d" 33: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 33: Test timeout computed to be: 7200 29: 60% completed 29: 70% completed 29: 80% completed 33: Running 5 test cases... 33: Entering test module "Integration_3D" 33: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(102): Entering test case "integration_3D" 29: 90% completed 29: 100% completed 29: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(46): Leaving test case "integration_2D_ensemble"; testing time: 29206300us 29: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(78): Entering test case "integration_2D_units" 29: 10% completed 29: 20% completed 29: 30% completed 13: 30% completed 29: 40% completed 29: 50% completed 29: 60% completed 29: 70% completed 29: 80% completed 29: 90% completed 29: 100% completed 29: 29: *** No errors detected 29: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(78): Leaving test case "integration_2D_units"; testing time: 10676586us 29: Leaving test module "Integration_2D"; testing time: 48938750us 29:  23/50 Test #29: test_integration_2d_1 .................... Passed 52.73 sec test 35 Start 35: test_integration_3d_amr_1 35: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_3d_amr" 35: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 35: Test timeout computed to be: 7200 35: Running 2 test cases... 35: Entering test module "Integration_3D_AMR" 35: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(19): Entering test case "integration_3D_amr" 35: 10% completed 35: 20% completed 35: 30% completed 35: 40% completed 35: 50% completed 35: 60% completed 35: 70% completed 35: 80% completed 35: 90% completed 35: 100% completed 35: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(19): Leaving test case "integration_3D_amr"; testing time: 42503920us 35: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(60): Entering test case "integration_3D_amr_refine_coarsen" 33: 10% completed 35: 10% completed 13: 40% completed 33: 20% completed 35: 20% completed 33: 30% completed 33: 40% completed 35: 30% completed 35: 40% completed 33: 50% completed 33: 60% completed 33: 70% completed 13: 50% completed 35: 50% completed 33: 80% completed 35: 60% completed 35: 70% completed 33: 90% completed 35: 80% completed 35: 90% completed 33: 100% completed 33: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(102): Leaving test case "integration_3D"; testing time: 519741525us 33: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(107): Entering test case "integration_3D_short" 35: 100% completed 35: 35: *** No errors detected 35: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(60): Leaving test case "integration_3D_amr_refine_coarsen"; testing time: 465455203us 35: Leaving test module "Integration_3D_AMR"; testing time: 507960004us 35:  24/50 Test #35: test_integration_3d_amr_1 ................ Passed 515.35 sec test 37 Start 37: test_integration_3d_amr_device_1 37: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_3d_amr_device" 37: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 37: Test timeout computed to be: 7200 37: Running 1 test case... 37: Entering test module "Integration_3D_AMR" 37: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr_device.cc(19): Entering test case "integration_3D_amr_device" 13: 60% completed 37: 10% completed 37: 20% completed 37: 30% completed 37: 40% completed 13: 70% completed 37: 50% completed 37: 60% completed 37: 70% completed 37: 80% completed 37: 90% completed 13: 80% completed 37: 100% completed 37: 37: *** No errors detected 37: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr_device.cc(19): Leaving test case "integration_3D_amr_device"; testing time: 462867172us 37: Leaving test module "Integration_3D_AMR"; testing time: 462868006us 37:  25/50 Test #37: test_integration_3d_amr_device_1 ......... Passed 466.98 sec test 39 Start 39: test_integration_da_augmented_1 39: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_da_augmented" 39: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 39: Test timeout computed to be: 7200 39: Running 1 test case... 39: Entering test module "Integration_Data_Assimilation_Augmented" 39: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da_augmented.cc(19): Entering test case "integration_3D_data_assimilation_augmented" 39: Reading the experimental log file... 39: Done. Log entries found for 1 camera(s), with 2 frame(s). 39: Starting the main time stepping loop... 39: 10% completed 39: 20% completed 39: 30% completed 39: 40% completed 39: 50% completed 39: 60% completed 13: 90% completed 39: 70% completed 39: Performing data assimilation at time 0.04... 39: Rank: 0 | Old parameters for member 0: 0.413453 39: Rank: 0 | Old parameters for member 1: 0.385362 39: Rank: 0 | Old parameters for member 2: 0.446065 39: Rank: 0 | Number expt sites mapped to DOFs: 2 39: Getting the perturbed innovation... 39: Applying the Kalman gain... 39: Updating the ensemble members... 39: Done. 39: Rank: 0 | New parameters for member 0: 0.121104 39: Rank: 0 | New parameters for member 1: 0.142225 39: Rank: 0 | New parameters for member 2: 0.107206 39: 80% completed 39: 90% completed 39: 100% completed 39: 39: *** No errors detected 39: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da_augmented.cc(19): Leaving test case "integration_3D_data_assimilation_augmented"; testing time: 224070529us 39: Leaving test module "Integration_Data_Assimilation_Augmented"; testing time: 224071562us 39:  26/50 Test #39: test_integration_da_augmented_1 .......... Passed 227.73 sec test 41 Start 41: test_integration_thermoelastic_1 41: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic" 41: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 41: Test timeout computed to be: 7200 41: Running 2 test cases... 41: Entering test module "Integration_Thermoelastic" 41: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_thermoelastic.cc(19): Entering test case "integration_thermoelastic" 13: 100% completed 13: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_device.cc(19): Leaving test case "integration_3D_device"; testing time: 1722252823us 13: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_device.cc(46): Entering test case "integration_3D_checkpoint_restart_device" 13: 10% completed 13: 20% completed 13: 30% completed 13: 40% completed 13: 50% completed 13: 60% completed 13: 70% completed 13: Checkpoint reached 13: 80% completed 13: 90% completed 13: 100% completed 33: 10% completed 13: Restarting from file 13: 80% completed 13: 90% completed 13: 100% completed 13: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_device.cc(46): Leaving test case "integration_3D_checkpoint_restart_device"; testing time: 557920825us 13: Leaving test module "Integration_3D_Device"; testing time: 2280174010us 13:  13: *** No errors detected 13:  27/50 Test #13: test_integration_3d_device_1 ............. Passed 2284.07 sec test 43 Start 43: test_material_deposition_1 43: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_material_deposition" 43: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 43: Test timeout computed to be: 7200 43: Running 11 test cases... 43: Entering test module "MaterialDeposition" 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(50): Entering test case "read_material_deposition_file_2d" 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(50): Leaving test case "read_material_deposition_file_2d"; testing time: 30133us 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(92): Entering test case "read_material_deposition_file_3d" 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(92): Leaving test case "read_material_deposition_file_3d"; testing time: 40681us 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(134): Entering test case "get_elements_to_activate_2d" 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(134): Leaving test case "get_elements_to_activate_2d"; testing time: 229815us 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(195): Entering test case "get_elements_to_activate_3d" 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(195): Leaving test case "get_elements_to_activate_3d"; testing time: 765524us 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(262): Entering test case "material_deposition" 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(262): Leaving test case "material_deposition"; testing time: 44494839us 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(395): Entering test case "deposition_from_scan_path_2d" 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(395): Leaving test case "deposition_from_scan_path_2d"; testing time: 11374us 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(445): Entering test case "deposition_from_scan_path_3d" 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(445): Leaving test case "deposition_from_scan_path_3d"; testing time: 264us 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(499): Entering test case "deposition_from_L_scan_path_3d" 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(499): Leaving test case "deposition_from_L_scan_path_3d"; testing time: 38325us 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(586): Entering test case "deposition_from_diagonal_scan_path_3d" 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(586): Leaving test case "deposition_from_diagonal_scan_path_3d"; testing time: 33837us 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(640): Entering test case "merge_multiple_deposition_paths" 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(640): Leaving test case "merge_multiple_deposition_paths"; testing time: 147us 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(697): Entering test case "deposition_quaternion_straight_line" 43: 43: *** No errors detected 43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(697): Leaving test case "deposition_quaternion_straight_line"; testing time: 39713us 43: Leaving test module "MaterialDeposition"; testing time: 45686805us 43:  28/50 Test #43: test_material_deposition_1 ............... Passed 48.91 sec test 45 Start 45: test_microstructure_1 45: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_microstructure" 45: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 45: Test timeout computed to be: 7200 45: Running 1 test case... 45: Entering test module "MicroStructure" 45: /var/jenkins/workspace/adamantine-nightly/tests/test_microstructure.cc(53): Entering test case "G_and_R" 45: 45: *** No errors detected 45: /var/jenkins/workspace/adamantine-nightly/tests/test_microstructure.cc(53): Leaving test case "G_and_R"; testing time: 964318us 45: Leaving test module "MicroStructure"; testing time: 964360us 45:  29/50 Test #45: test_microstructure_1 .................... Passed 4.24 sec test 47 Start 47: test_thermal_physics_1 47: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_thermal_physics" 47: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 47: Test timeout computed to be: 7200 47: Running 7 test cases... 47: Entering test module "ThermalPhysics" 47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(15): Entering test case "thermal_2d_explicit_host" 47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(15): Leaving test case "thermal_2d_explicit_host"; testing time: 4354747us 47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(28): Entering test case "thermal_2d_manufactured_solution_host" 47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(28): Leaving test case "thermal_2d_manufactured_solution_host"; testing time: 4197687us 47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(33): Entering test case "initial_temperature_host" 47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(33): Leaving test case "initial_temperature_host"; testing time: 4000670us 47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(38): Entering test case "energy_conservation_host" 47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(38): Leaving test case "energy_conservation_host"; testing time: 25768454us 47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(43): Entering test case "radiation_bcs_host" 47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(43): Leaving test case "radiation_bcs_host"; testing time: 8823755us 47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(48): Entering test case "convection_bcs_host" 33: 20% completed 47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(48): Leaving test case "convection_bcs_host"; testing time: 238461435us 47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(53): Entering test case "reference_temperature_host" 47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(53): Leaving test case "reference_temperature_host"; testing time: 665549us 47: Leaving test module "ThermalPhysics"; testing time: 286272965us 47:  47: *** No errors detected 47:  30/50 Test #47: test_thermal_physics_1 ................... Passed 298.93 sec test 49 Start 49: test_ensemble_management_1 49: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_ensemble_management" 49: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 49: Test timeout computed to be: 7200 49: Running 1 test case... 49: Entering test module "EnsembleManagement" 49: /var/jenkins/workspace/adamantine-nightly/tests/test_ensemble_management.cc(17): Entering test case "database_ensemble" 49: 49: *** No errors detected 49: /var/jenkins/workspace/adamantine-nightly/tests/test_ensemble_management.cc(17): Leaving test case "database_ensemble"; testing time: 215970us 49: Leaving test module "EnsembleManagement"; testing time: 216014us 49:  31/50 Test #49: test_ensemble_management_1 ............... Passed 7.27 sec 33: 30% completed 33: 40% completed 33: 50% completed 41: 10% completed 33: 60% completed 27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(44): Leaving test case "connected_components"; testing time: 3842385198us 27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(144): Entering test case "disconnected_components" 27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(144): Leaving test case "disconnected_components"; testing time: 209947us 27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(238): Entering test case "adaptive_mesh_refinement" 27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(238): Leaving test case "adaptive_mesh_refinement"; testing time: 1961833us 27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(341): Entering test case "vertex_contacts" 27: 27: *** No errors detected 27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(341): Leaving test case "vertex_contacts"; testing time: 247482us 27: Leaving test module "Master Test Suite"; testing time: 3844804622us 27:  32/50 Test #27: test_connected_components_1 .............. Passed 3848.46 sec test 28 Start 28: test_connected_components_2 28: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_connected_components" 28: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 28: Test timeout computed to be: 7200 28: Running 4 test cases... 28: Entering test module "Master Test Suite" 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(44): Entering test case "connected_components" 28: Running 4 test cases... 28: Entering test module "Master Test Suite" 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(44): Entering test case "connected_components" 33: 70% completed 33: 80% completed 33: 90% completed 33: 100% completed 33: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(107): Leaving test case "integration_3D_short"; testing time: 3930792637us 33: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(112): Entering test case "integration_3D_five_axis" 41: 20% completed 33: 10% completed 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(44): Leaving test case "connected_components"; testing time: 3000257034us 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(144): Entering test case "disconnected_components" 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(44): Leaving test case "connected_components"; testing time: 2999985541us 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(144): Entering test case "disconnected_components" 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(144): Leaving test case "disconnected_components"; testing time: 282603us 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(238): Entering test case "adaptive_mesh_refinement" 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(144): Leaving test case "disconnected_components"; testing time: 198176us 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(238): Entering test case "adaptive_mesh_refinement" 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(238): Leaving test case "adaptive_mesh_refinement"; testing time: 1297744us 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(341): Entering test case "vertex_contacts" 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(238): Leaving test case "adaptive_mesh_refinement"; testing time: 1328686us 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(341): Entering test case "vertex_contacts" 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(341): Leaving test case "vertex_contacts"; testing time: 264984us 28: Leaving test module "Master Test Suite"; testing time: 3002102506us 28:  28: *** No errors detected 28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(341): Leaving test case "vertex_contacts"; testing time: 233983us 28: Leaving test module "Master Test Suite"; testing time: 3001746617us 28:  28: *** No errors detected 28:  33/50 Test #28: test_connected_components_2 .............. Passed 3006.17 sec test 30 Start 30: test_integration_2d_2 30: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_2d" 30: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 30: Test timeout computed to be: 7200 30: Running 3 test cases... 30: Entering test module "Integration_2D" 30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(19): Entering test case "integration_2D" 30: Running 3 test cases... 30: Entering test module "Integration_2D" 30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(19): Entering test case "integration_2D" 30: 10% completed 30: 20% completed 30: 30% completed 30: 40% completed 30: 50% completed 30: 60% completed 30: 70% completed 30: 80% completed 30: 90% completed 30: 100% completed 30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(19): Leaving test case "integration_2D"; testing time: 6874210us 30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(46): Entering test case "integration_2D_ensemble" 30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(19): Leaving test case "integration_2D"; testing time: 6529479us 30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(46): Entering test case "integration_2D_ensemble" 30: Starting the main time stepping loop... 30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(46): Leaving test case "integration_2D_ensemble"; testing time: 3219512us 30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(78): Entering test case "integration_2D_units" 30: 10% completed 30: 20% completed 30: 30% completed 30: 40% completed 30: 50% completed 30: 60% completed 30: 70% completed 30: 80% completed 30: 90% completed 30: 100% completed 30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(46): Leaving test case "integration_2D_ensemble"; testing time: 15509391us 30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(78): Entering test case "integration_2D_units" 30: 10% completed 30: 20% completed 30: 30% completed 30: 40% completed 30: 50% completed 30: 60% completed 30: 70% completed 30: 80% completed 30: 90% completed 30: 100% completed 30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(78): Leaving test case "integration_2D_units"; testing time: 19039176us 30: Leaving test module "Integration_2D"; testing time: 29133923us 30:  30: *** No errors detected 30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(78): Leaving test case "integration_2D_units"; testing time: 6749630us 30: Leaving test module "Integration_2D"; testing time: 28789540us 30:  30: *** No errors detected 30:  34/50 Test #30: test_integration_2d_2 .................... Passed 32.96 sec test 32 Start 32: test_integration_2d_device_2 32: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_2d_device" 32: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 32: Test timeout computed to be: 7200 32: Running 1 test case... 32: Entering test module "Integration_2D_Device" 32: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d_device.cc(19): Entering test case "intregation_2D_device" 32: Running 1 test case... 32: Entering test module "Integration_2D_Device" 32: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d_device.cc(19): Entering test case "intregation_2D_device" 32: 10% completed 32: 20% completed 32: 30% completed 32: 40% completed 32: 50% completed 32: 60% completed 32: 70% completed 32: 80% completed 32: 90% completed 32: 100% completed 32: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d_device.cc(19): Leaving test case "intregation_2D_device"; testing time: 8314459us 32: Leaving test module "Integration_2D_Device"; testing time: 8315014us 32:  32: *** No errors detected 32: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d_device.cc(19): Leaving test case "intregation_2D_device"; testing time: 7968238us 32: Leaving test module "Integration_2D_Device"; testing time: 7968591us 32:  32: *** No errors detected 32:  35/50 Test #32: test_integration_2d_device_2 ............. Passed 12.64 sec test 34 Start 34: test_integration_3d_2 34: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_3d" 34: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 34: Test timeout computed to be: 7200 34: Running 5 test cases... 34: Entering test module "Integration_3D" 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(102): Entering test case "integration_3D" 34: Running 5 test cases... 34: Entering test module "Integration_3D" 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(102): Entering test case "integration_3D" 34: 10% completed 41: 30% completed 34: 20% completed 34: 30% completed 34: 40% completed 34: 50% completed 34: 60% completed 34: 70% completed 34: 80% completed 34: 90% completed 34: 100% completed 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(102): Leaving test case "integration_3D"; testing time: 201242523us 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(107): Entering test case "integration_3D_short" 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(102): Leaving test case "integration_3D"; testing time: 200719311us 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(107): Entering test case "integration_3D_short" 36/50 Test #33: test_integration_3d_1 ....................***Timeout 7200.11 sec 34: 10% completed 34: 20% completed 34: 30% completed 34: 40% completed 34: 50% completed 34: 60% completed 41: 40% completed 34: 70% completed 34: 80% completed 34: 90% completed 34: 100% completed 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(107): Leaving test case "integration_3D_short"; testing time: 1351471694us 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(112): Entering test case "integration_3D_five_axis" 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(107): Leaving test case "integration_3D_short"; testing time: 1351605420us 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(112): Entering test case "integration_3D_five_axis" 37/50 Test #41: test_integration_thermoelastic_1 .........***Timeout 7200.10 sec test 36 Start 36: test_integration_3d_amr_2 36: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_3d_amr" 36: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 36: Test timeout computed to be: 7200 36: Running 2 test cases... 36: Entering test module "Integration_3D_AMR" 36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(19): Entering test case "integration_3D_amr" 36: Running 2 test cases... 36: Entering test module "Integration_3D_AMR" 36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(19): Entering test case "integration_3D_amr" 36: 10% completed 36: 20% completed 36: 30% completed 36: 40% completed 36: 50% completed 36: 60% completed 36: 70% completed 36: 80% completed 36: 90% completed 36: 100% completed 36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(19): Leaving test case "integration_3D_amr"; testing time: 14899424us 36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(60): Entering test case "integration_3D_amr_refine_coarsen" 36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(19): Leaving test case "integration_3D_amr"; testing time: 14961077us 36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(60): Entering test case "integration_3D_amr_refine_coarsen" 36: 10% completed 36: 20% completed 36: 30% completed 36: 40% completed 36: 50% completed 36: 60% completed 36: 70% completed 36: 80% completed 36: 90% completed 36: 100% completed 36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(60): Leaving test case "integration_3D_amr_refine_coarsen"; testing time: 140983668us 36: Leaving test module "Integration_3D_AMR"; testing time: 155884098us 36:  36: *** No errors detected 36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(60): Leaving test case "integration_3D_amr_refine_coarsen"; testing time: 140983663us 36: Leaving test module "Integration_3D_AMR"; testing time: 155945946us 36:  36: *** No errors detected 36:  38/50 Test #36: test_integration_3d_amr_2 ................ Passed 164.17 sec test 38 Start 38: test_integration_3d_amr_device_2 38: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_3d_amr_device" 38: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 38: Test timeout computed to be: 7200 38: Running 1 test case... 38: Entering test module "Integration_3D_AMR" 38: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr_device.cc(19): Entering test case "integration_3D_amr_device" 38: Running 1 test case... 38: Entering test module "Integration_3D_AMR" 38: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr_device.cc(19): Entering test case "integration_3D_amr_device" 38: 10% completed 38: 20% completed 38: 30% completed 38: 40% completed 38: 50% completed 38: 60% completed 38: 70% completed 38: 80% completed 38: 90% completed 38: 100% completed 38: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr_device.cc(19): Leaving test case "integration_3D_amr_device"; testing time: 124150506us 38: Leaving test module "Integration_3D_AMR"; testing time: 124151247us 38:  38: *** No errors detected 38: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr_device.cc(19): Leaving test case "integration_3D_amr_device"; testing time: 124086953us 38: Leaving test module "Integration_3D_AMR"; testing time: 124087902us 38:  38: *** No errors detected 38:  39/50 Test #38: test_integration_3d_amr_device_2 ......... Passed 131.82 sec test 40 Start 40: test_integration_da_augmented_2 40: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_da_augmented" 40: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 40: Test timeout computed to be: 7200 40: Running 1 test case... 40: Entering test module "Integration_Data_Assimilation_Augmented" 40: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da_augmented.cc(19): Entering test case "integration_3D_data_assimilation_augmented" 40: Running 1 test case... 40: Entering test module "Integration_Data_Assimilation_Augmented" 40: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da_augmented.cc(19): Entering test case "integration_3D_data_assimilation_augmented" 40: Reading the experimental log file... 40: Done. Log entries found for 1 camera(s), with 2 frame(s). 40: Starting the main time stepping loop... 40: 10% completed 40: 20% completed 40: 30% completed 40: Rank: 1 | Old parameters for member 2: 0.446065 40: Rank: 1 | Number expt sites mapped to DOFs: 2 40: 40% completed 40: 50% completed 40: 60% completed 40: 70% completed 40: Performing data assimilation at time 0.04... 40: Rank: 0 | Old parameters for member 0: 0.413453 40: Rank: 0 | Old parameters for member 1: 0.385362 40: Rank: 0 | Number expt sites mapped to DOFs: 2 40: Getting the perturbed innovation... 40: Applying the Kalman gain... 40: Updating the ensemble members... 40: Rank: 1 | New parameters for member 2: 0.107206 40: Done. 40: Rank: 0 | New parameters for member 0: 0.121104 40: Rank: 0 | New parameters for member 1: 0.142225 40: 80% completed 40: 90% completed 40: 100% completed 40: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da_augmented.cc(19): Leaving test case "integration_3D_data_assimilation_augmented"; testing time: 76738344us 40: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da_augmented.cc(19): Leaving test case "integration_3D_data_assimilation_augmented"; testing time: 76665829us 40: Leaving test module "Integration_Data_Assimilation_Augmented"; testing time: 76666239us 40:  40: *** No errors detected 40:  40: *** No errors detected 40: Leaving test module "Integration_Data_Assimilation_Augmented"; testing time: 76738712us 40:  40/50 Test #40: test_integration_da_augmented_2 .......... Passed 84.87 sec test 42 Start 42: test_integration_thermoelastic_2 42: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic" 42: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 42: Test timeout computed to be: 7200 42: Running 2 test cases... 42: Entering test module "Integration_Thermoelastic" 42: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_thermoelastic.cc(19): Entering test case "integration_thermoelastic" 42: Running 2 test cases... 42: Entering test module "Integration_Thermoelastic" 42: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_thermoelastic.cc(19): Entering test case "integration_thermoelastic" 42:  42: -------------------------------------------------------- 42: An error occurred in line <1581> of file in function 42: Number dealii::LinearAlgebra::distributed::Vector::operator()(size_type) const [with Number = double; MemorySpace = dealii::MemorySpace::Host; size_type = long unsigned int] 42: The violated condition was: 42: partitioner->in_local_range(global_index) || vector_is_ghosted == true 42: Additional information: 42: You tried to read a ghost element of this vector, but it has not 42: imported its ghost values. 42: 42: Stacktrace: 42: ----------- 42: #0 /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: dealii::LinearAlgebra::distributed::Vector::operator()(unsigned long) const 42: #1 /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: dealii::LinearAlgebra::distributed::Vector::operator[](unsigned long) const 42: #2 /opt/dealii/lib/libdeal_II.g.so.9.6.2: dealii::LinearAlgebra::distributed::Vector::extract_subvector_to(dealii::ArrayView const&, dealii::ArrayView&) const 42: #3 /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: void dealii::DoFCellAccessor<3, 3, false>::get_dof_values(dealii::ReadVector const&, double*, double*) const 42: #4 /opt/dealii/lib/libdeal_II.g.so.9.6.2: void dealii::DoFCellAccessor<3, 3, false>::get_dof_values, double>(dealii::ReadVector const&, dealii::Vector&) const 42: #5 /opt/dealii/lib/libdeal_II.g.so.9.6.2: void dealii::DoFCellAccessor<3, 3, false>::get_interpolated_dof_values(dealii::ReadVector const&, dealii::Vector&, unsigned short) const 42: #6 /opt/dealii/lib/libdeal_II.g.so.9.6.2: void dealii::FEValuesBase<3, 3>::CellIteratorWrapper::get_interpolated_dof_values(dealii::ReadVector const&, dealii::Vector&) const 42: #7 /opt/dealii/lib/libdeal_II.g.so.9.6.2: void dealii::FEValuesViews::Vector<3, 3>::get_function_symmetric_gradients(dealii::ReadVector const&, std::vector >::type, std::allocator >::type> >&) const 42: #8 /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: adamantine::MechanicalPhysics<3, -1, 3, adamantine::SolidLiquidPowder, dealii::MemorySpace::Host>::evaluate_trial_state(dealii::LinearAlgebra::distributed::Vector const&) 42: #9 /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: adamantine::MechanicalPhysics<3, -1, 3, adamantine::SolidLiquidPowder, dealii::MemorySpace::Host>::evaluate_residual(dealii::LinearAlgebra::distributed::Vector const&) 42: #10 /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: adamantine::MechanicalPhysics<3, -1, 3, adamantine::SolidLiquidPowder, dealii::MemorySpace::Host>::solve() 42: #11 /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: std::pair, dealii::LinearAlgebra::distributed::Vector > run<3, -1, 3, adamantine::SolidLiquidPowder, dealii::MemorySpace::Host>(ompi_communicator_t* const&, boost::property_tree::basic_ptree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::less, std::allocator > > > const&, std::vector >&) 42: #12 /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: integration_thermoelastic::test_method() 42: #13 /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: 42: #14 /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: boost::detail::function::void_function_invoker0::invoke(boost::detail::function::function_buffer&) 42: #15 /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: 42: #16 /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: boost::execution_monitor::catch_signals(boost::function const&) 42: #17 /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: boost::execution_monitor::execute(boost::function const&) 42: #18 /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: boost::execution_monitor::vexecute(boost::function const&) 42: #19 /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: boost::unit_test::unit_test_monitor_t::execute_and_translate(boost::function const&, unsigned long) 42: #20 /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: 42: #21 /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: 42: #22 /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: boost::unit_test::framework::run(unsigned long, bool) 42: -------------------------------------------------------- 42: 42: Calling MPI_Abort now. 42: To break execution in a GDB session, execute 'break MPI_Abort' before running. You can also put the following into your ~/.gdbinit: 42: set breakpoint pending on 42: break MPI_Abort 42: set breakpoint pending auto 42: -------------------------------------------------------------------------- 42: MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD 42: with errorcode 255. 42: 42: NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. 42: You may or may not see output from other processes, depending on 42: exactly when Open MPI kills them. 42: -------------------------------------------------------------------------- 41/50 Test #42: test_integration_thermoelastic_2 .........***Failed 12.06 sec test 44 Start 44: test_material_deposition_2 44: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_material_deposition" 44: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 44: Test timeout computed to be: 7200 34: 10% completed 44: Running 11 test cases... 44: Entering test module "MaterialDeposition" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(50): Entering test case "read_material_deposition_file_2d" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(50): Leaving test case "read_material_deposition_file_2d"; testing time: 24952us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(92): Entering test case "read_material_deposition_file_3d" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(92): Leaving test case "read_material_deposition_file_3d"; testing time: 25424us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(134): Test case "get_elements_to_activate_2d" is skipped because precondition failed: the test only works in serial 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(195): Test case "get_elements_to_activate_3d" is skipped because precondition failed: the test only works in serial 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(262): Entering test case "material_deposition" 44: Running 11 test cases... 44: Entering test module "MaterialDeposition" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(50): Entering test case "read_material_deposition_file_2d" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(50): Leaving test case "read_material_deposition_file_2d"; testing time: 426us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(92): Entering test case "read_material_deposition_file_3d" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(92): Leaving test case "read_material_deposition_file_3d"; testing time: 223us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(134): Test case "get_elements_to_activate_2d" is skipped because precondition failed: the test only works in serial 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(195): Test case "get_elements_to_activate_3d" is skipped because precondition failed: the test only works in serial 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(262): Entering test case "material_deposition" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(262): Leaving test case "material_deposition"; testing time: 17033106us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(395): Entering test case "deposition_from_scan_path_2d" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(395): Leaving test case "deposition_from_scan_path_2d"; testing time: 13418us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(445): Entering test case "deposition_from_scan_path_3d" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(445): Leaving test case "deposition_from_scan_path_3d"; testing time: 222us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(499): Entering test case "deposition_from_L_scan_path_3d" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(262): Leaving test case "material_deposition"; testing time: 17085827us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(395): Entering test case "deposition_from_scan_path_2d" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(395): Leaving test case "deposition_from_scan_path_2d"; testing time: 343us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(445): Entering test case "deposition_from_scan_path_3d" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(445): Leaving test case "deposition_from_scan_path_3d"; testing time: 256us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(499): Entering test case "deposition_from_L_scan_path_3d" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(499): Leaving test case "deposition_from_L_scan_path_3d"; testing time: 257us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(586): Entering test case "deposition_from_diagonal_scan_path_3d" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(499): Leaving test case "deposition_from_L_scan_path_3d"; testing time: 22365us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(586): Entering test case "deposition_from_diagonal_scan_path_3d" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(586): Leaving test case "deposition_from_diagonal_scan_path_3d"; testing time: 12214us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(640): Entering test case "merge_multiple_deposition_paths" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(640): Leaving test case "merge_multiple_deposition_paths"; testing time: 139us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(697): Entering test case "deposition_quaternion_straight_line" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(586): Leaving test case "deposition_from_diagonal_scan_path_3d"; testing time: 11739us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(640): Entering test case "merge_multiple_deposition_paths" 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(640): Leaving test case "merge_multiple_deposition_paths"; testing time: 131us 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(697): Entering test case "deposition_quaternion_straight_line" 44: 44: *** No errors detected 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(697): Leaving test case "deposition_quaternion_straight_line"; testing time: 11937us 44: Leaving test module "MaterialDeposition"; testing time: 17163377us 44:  44: *** No errors detected 44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(697): Leaving test case "deposition_quaternion_straight_line"; testing time: 11893us 44: Leaving test module "MaterialDeposition"; testing time: 17095412us 44:  42/50 Test #44: test_material_deposition_2 ............... Passed 25.39 sec test 46 Start 46: test_microstructure_2 46: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_microstructure" 46: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 46: Test timeout computed to be: 7200 46: Running 1 test case... 46: Entering test module "MicroStructure" 46: /var/jenkins/workspace/adamantine-nightly/tests/test_microstructure.cc(53): Entering test case "G_and_R" 46: Running 1 test case... 46: Entering test module "MicroStructure" 46: /var/jenkins/workspace/adamantine-nightly/tests/test_microstructure.cc(53): Entering test case "G_and_R" 46: 46: *** No errors detected 46: Test case G_and_R did not check any assertions 46: /var/jenkins/workspace/adamantine-nightly/tests/test_microstructure.cc(53): Leaving test case "G_and_R"; testing time: 532229us 46: Leaving test module "MicroStructure"; testing time: 532284us 46:  46: *** No errors detected 46: /var/jenkins/workspace/adamantine-nightly/tests/test_microstructure.cc(53): Leaving test case "G_and_R"; testing time: 442614us 46: Leaving test module "MicroStructure"; testing time: 442666us 46:  43/50 Test #46: test_microstructure_2 .................... Passed 8.07 sec test 48 Start 48: test_thermal_physics_2 48: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_thermal_physics" 48: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 48: Test timeout computed to be: 7200 48: Running 7 test cases... 48: Entering test module "ThermalPhysics" 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(15): Entering test case "thermal_2d_explicit_host" 48: Running 7 test cases... 48: Entering test module "ThermalPhysics" 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(15): Entering test case "thermal_2d_explicit_host" 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(15): Leaving test case "thermal_2d_explicit_host"; testing time: 286731us 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(28): Entering test case "thermal_2d_manufactured_solution_host" 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(15): Leaving test case "thermal_2d_explicit_host"; testing time: 358133us 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(28): Entering test case "thermal_2d_manufactured_solution_host" 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(28): Leaving test case "thermal_2d_manufactured_solution_host"; testing time: 234862us 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(33): Entering test case "initial_temperature_host" 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(28): Leaving test case "thermal_2d_manufactured_solution_host"; testing time: 234663us 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(33): Entering test case "initial_temperature_host" 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(33): Leaving test case "initial_temperature_host"; testing time: 228356us 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(33): Leaving test case "initial_temperature_host"; testing time: 228466us 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(38): Entering test case "energy_conservation_host" 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(38): Entering test case "energy_conservation_host" 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(38): Leaving test case "energy_conservation_host"; testing time: 9454329us 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(43): Entering test case "radiation_bcs_host" 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(38): Leaving test case "energy_conservation_host"; testing time: 9454531us 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(43): Entering test case "radiation_bcs_host" 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(43): Leaving test case "radiation_bcs_host"; testing time: 5262302us 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(48): Entering test case "convection_bcs_host" 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(43): Leaving test case "radiation_bcs_host"; testing time: 5262266us 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(48): Entering test case "convection_bcs_host" 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(48): Leaving test case "convection_bcs_host"; testing time: 86330782us 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(53): Entering test case "reference_temperature_host" 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(48): Leaving test case "convection_bcs_host"; testing time: 86330889us 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(53): Entering test case "reference_temperature_host" 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(53): Leaving test case "reference_temperature_host"; testing time: 178984us 48: Leaving test module "ThermalPhysics"; testing time: 102049220us 48:  48: *** No errors detected 48:  48: *** No errors detected 48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(53): Leaving test case "reference_temperature_host"; testing time: 235313us 48: Leaving test module "ThermalPhysics"; testing time: 102034126us 48:  44/50 Test #48: test_thermal_physics_2 ................... Passed 110.12 sec test 50 Start 50: test_ensemble_management_2 50: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_ensemble_management" 50: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 50: Test timeout computed to be: 7200 50: Running 1 test case... 50: Entering test module "EnsembleManagement" 50: /var/jenkins/workspace/adamantine-nightly/tests/test_ensemble_management.cc(17): Entering test case "database_ensemble" 50: 50: *** No errors detected 50: /var/jenkins/workspace/adamantine-nightly/tests/test_ensemble_management.cc(17): Leaving test case "database_ensemble"; testing time: 431us 50: Leaving test module "EnsembleManagement"; testing time: 455us 50: Running 1 test case... 50: Entering test module "EnsembleManagement" 50: /var/jenkins/workspace/adamantine-nightly/tests/test_ensemble_management.cc(17): Entering test case "database_ensemble" 50: 50: *** No errors detected 50: /var/jenkins/workspace/adamantine-nightly/tests/test_ensemble_management.cc(17): Leaving test case "database_ensemble"; testing time: 77219us 50: Leaving test module "EnsembleManagement"; testing time: 77254us 50:  45/50 Test #50: test_ensemble_management_2 ............... Passed 6.65 sec 34: 20% completed 34: 30% completed 34: 40% completed 34: 50% completed 34: 60% completed 34: 70% completed 34: 80% completed 34: 90% completed 34: 100% completed 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(112): Leaving test case "integration_3D_five_axis"; testing time: 2696933883us 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(117): Entering test case "integration_3D_checkpoint_restart" 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(112): Leaving test case "integration_3D_five_axis"; testing time: 2696762104us 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(117): Entering test case "integration_3D_checkpoint_restart" 34: 10% completed 34: 20% completed 34: 30% completed 34: 40% completed 34: 50% completed 34: 60% completed 34: 70% completed 34: Checkpoint reached 34: 80% completed 34: 90% completed 34: 100% completed 34: Restarting from file 34: 80% completed 34: 90% completed 34: 100% completed 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(117): Leaving test case "integration_3D_checkpoint_restart"; testing time: 94516006us 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(169): Entering test case "hourglass" 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(117): Leaving test case "integration_3D_checkpoint_restart"; testing time: 94519566us 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(169): Entering test case "hourglass" 34: n_time_step: 1 time: 0 n_dofs (thermal) after mesh refinement: 1172 34: n_time_step: 100 time: 0.99 n_dofs (thermal) after cell activation: 1178 34: 10% completed 34: n_time_step: 101 time: 1 n_dofs (thermal) after cell activation: 1178 34: n_time_step: 124 time: 1.23 n_dofs (thermal) after cell activation: 1181 34: n_time_step: 147 time: 1.46 n_dofs (thermal) after cell activation: 1184 34: n_time_step: 170 time: 1.69 n_dofs (thermal) after cell activation: 1187 34: n_time_step: 171 time: 1.7 n_dofs (thermal) after cell activation: 1187 34: n_time_step: 194 time: 1.93 n_dofs (thermal) after cell activation: 1190 34: 20% completed 34: n_time_step: 217 time: 2.16 n_dofs (thermal) after cell activation: 1193 34: n_time_step: 241 time: 2.4 n_dofs (thermal) after cell activation: 1196 34: n_time_step: 264 time: 2.63 n_dofs (thermal) after cell activation: 1199 34: n_time_step: 287 time: 2.86 n_dofs (thermal) after cell activation: 1202 34: n_time_step: 301 time: 3 n_dofs (thermal) after cell activation: 1204 34: 30% completed 34: n_time_step: 325 time: 3.24 n_dofs (thermal) after cell activation: 1205 34: n_time_step: 348 time: 3.47 n_dofs (thermal) after cell activation: 1206 34: n_time_step: 371 time: 3.7 n_dofs (thermal) after cell activation: 1207 34: n_time_step: 395 time: 3.94 n_dofs (thermal) after cell activation: 1208 34: 40% completed 34: n_time_step: 418 time: 4.17 n_dofs (thermal) after cell activation: 1209 34: n_time_step: 441 time: 4.4 n_dofs (thermal) after cell activation: 1210 34: n_time_step: 465 time: 4.64 n_dofs (thermal) after cell activation: 1211 34: n_time_step: 488 time: 4.87 n_dofs (thermal) after cell activation: 1212 34: 50% completed 34: n_time_step: 507 time: 5.06 n_dofs (thermal) after cell activation: 1216 34: n_time_step: 531 time: 5.3 n_dofs (thermal) after cell activation: 1217 34: n_time_step: 554 time: 5.53 n_dofs (thermal) after cell activation: 1218 34: n_time_step: 577 time: 5.76 n_dofs (thermal) after cell activation: 1219 34: n_time_step: 601 time: 6 n_dofs (thermal) after cell activation: 1220 34: 60% completed 34: n_time_step: 624 time: 6.23 n_dofs (thermal) after cell activation: 1221 34: n_time_step: 647 time: 6.46 n_dofs (thermal) after cell activation: 1222 34: n_time_step: 671 time: 6.7 n_dofs (thermal) after cell activation: 1223 34: n_time_step: 694 time: 6.93 n_dofs (thermal) after cell activation: 1224 34: 70% completed 34: n_time_step: 717 time: 7.16 n_dofs (thermal) after cell activation: 1226 34: n_time_step: 740 time: 7.39 n_dofs (thermal) after cell activation: 1227 34: n_time_step: 763 time: 7.62 n_dofs (thermal) after cell activation: 1228 34: n_time_step: 787 time: 7.86 n_dofs (thermal) after cell activation: 1229 34: 80% completed 34: n_time_step: 810 time: 8.09 n_dofs (thermal) after cell activation: 1230 34: n_time_step: 833 time: 8.32 n_dofs (thermal) after cell activation: 1231 34: n_time_step: 857 time: 8.56 n_dofs (thermal) after cell activation: 1232 34: n_time_step: 880 time: 8.79 n_dofs (thermal) after cell activation: 1233 34: 90% completed 34: n_time_step: 903 time: 9.02 n_dofs (thermal) after cell activation: 1234 34: n_time_step: 927 time: 9.26 n_dofs (thermal) after cell activation: 1235 34: n_time_step: 928 time: 9.27 n_dofs (thermal) after cell activation: 1238 34: n_time_step: 951 time: 9.5 n_dofs (thermal) after cell activation: 1239 34: n_time_step: 975 time: 9.74 n_dofs (thermal) after cell activation: 1240 34: n_time_step: 998 time: 9.97 n_dofs (thermal) after cell activation: 1241 34: 100% completed 34: Test case hourglass did not check any assertions 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(169): Leaving test case "hourglass"; testing time: 2204659250us 34: Leaving test module "Integration_3D"; testing time: 6548265217us 34:  34: *** No errors detected 34: Test case hourglass did not check any assertions 34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(169): Leaving test case "hourglass"; testing time: 2204684517us 34: Leaving test module "Integration_3D"; testing time: 6548856028us 34:  34: *** No errors detected 34:  46/50 Test #34: test_integration_3d_2 .................... Passed 6553.63 sec test 3 Start 3: test_integration_da_3 3: Test command: /usr/bin/mpiexec "-n" "3" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_da" 3: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 3: Test timeout computed to be: 7200 3: Running 3 test cases... 3: Entering test module "Integration_Data_Assimilation" 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation" 3: Running 3 test cases... 3: Entering test module "Integration_Data_Assimilation" 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation" 3: Running 3 test cases... 3: Entering test module "Integration_Data_Assimilation" 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation" 3: Reading the experimental log file... 3: Done. Log entries found for 1 camera(s), with 2 frame(s). 3: Starting the main time stepping loop... 3: 10% completed 3: 20% completed 3: 30% completed 3: 40% completed 3: Rank: 2 | Old parameters for member 2: 3: Rank: 1 | Old parameters for member 1: 3: Performing data assimilation at time 0.0211... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 2 | Number expt sites mapped to DOFs: 1 3: Rank: 1 | Number expt sites mapped to DOFs: 1 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Updating the ensemble members... 3: Done. 3: 50% completed 3: 60% completed 3: Rank: 1 | Old parameters for member 1: 3: Performing data assimilation at time 0.0316... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 2 | Old parameters for member 2: 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Rank: 2 | Number expt sites mapped to DOFs: 1 3: Rank: 1 | Number expt sites mapped to DOFs: 1 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Updating the ensemble members... 3: Done. 3: 70% completed 3: 80% completed 3: 90% completed 3: 100% completed 3: Reading the experimental log file... 3: Done. Log entries found for 1 camera(s), with 2 frame(s). 3: Reading the experimental log file... 3: Done. Log entries found for 1 camera(s), with 2 frame(s). 3: Reading the experimental log file... 3: Done. Log entries found for 1 camera(s), with 2 frame(s). 3: Starting the main time stepping loop... 3: Starting the main time stepping loop... 3: Starting the main time stepping loop... 3: 10% completed 3: 10% completed 3: 10% completed 3: 20% completed 3: 20% completed 3: 20% completed 3: 30% completed 3: 30% completed 3: 30% completed 3: 40% completed 3: 40% completed 3: 40% completed 3: Performing data assimilation at time 0.0211... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 0 | Old parameters for member 1: 3: Rank: 0 | Old parameters for member 2: 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Performing data assimilation at time 0.0211... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 0 | Old parameters for member 1: 3: Rank: 0 | Old parameters for member 2: 3: Performing data assimilation at time 0.0211... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 0 | Old parameters for member 1: 3: Rank: 0 | Old parameters for member 2: 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Updating the ensemble members... 3: Done. 3: Updating the ensemble members... 3: Done. 3: Updating the ensemble members... 3: Done. 3: 50% completed 3: 50% completed 3: 50% completed 3: 60% completed 3: 60% completed 3: 60% completed 3: Performing data assimilation at time 0.0316... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 0 | Old parameters for member 1: 3: Rank: 0 | Old parameters for member 2: 3: Performing data assimilation at time 0.0316... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 0 | Old parameters for member 1: 3: Rank: 0 | Old parameters for member 2: 3: Performing data assimilation at time 0.0316... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 0 | Old parameters for member 1: 3: Rank: 0 | Old parameters for member 2: 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Updating the ensemble members... 3: Done. 3: Updating the ensemble members... 3: Done. 3: Updating the ensemble members... 3: Done. 3: 70% completed 3: 70% completed 3: 70% completed 3: 80% completed 3: 80% completed 3: 80% completed 3: 90% completed 3: 90% completed 3: 90% completed 3: 100% completed 3: 100% completed 3: 100% completed 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 64879405us 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material" 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 64897074us 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material" 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 65218079us 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material" 3: Reading the experimental log file... 3: Done. Log entries found for 1 camera(s), with 1 frame(s). 3: Starting the main time stepping loop... 3: 10% completed 3: 20% completed 3: 30% completed 3: 40% completed 3: 50% completed 3: Rank: 2 | Old parameters for member 2: 3: Rank: 1 | Old parameters for member 1: 3: Rank: 1 | Number expt sites mapped to DOFs: 1 3: Rank: 2 | Number expt sites mapped to DOFs: 1 3: Performing data assimilation at time 0.12... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Updating the ensemble members... 3: Done. 3: 60% completed 3: 70% completed 3: 80% completed 3: 90% completed 3: 100% completed 3: Reading the experimental log file... 3: Done. Log entries found for 1 camera(s), with 1 frame(s). 3: Reading the experimental log file... 3: Done. Log entries found for 1 camera(s), with 1 frame(s). 3: Reading the experimental log file... 3: Done. Log entries found for 1 camera(s), with 1 frame(s). 3: Starting the main time stepping loop... 3: Starting the main time stepping loop... 3: Starting the main time stepping loop... 3: 10% completed 3: 10% completed 3: 10% completed 3: 20% completed 3: 20% completed 3: 20% completed 3: 30% completed 3: 30% completed 3: 30% completed 3: 40% completed 3: 40% completed 3: 40% completed 3: 50% completed 3: 50% completed 3: 50% completed 3: Performing data assimilation at time 0.12... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 0 | Old parameters for member 1: 3: Rank: 0 | Old parameters for member 2: 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Performing data assimilation at time 0.12... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 0 | Old parameters for member 1: 3: Rank: 0 | Old parameters for member 2: 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Performing data assimilation at time 0.12... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 0 | Old parameters for member 1: 3: Rank: 0 | Old parameters for member 2: 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Updating the ensemble members... 3: Done. 3: 60% completed 3: Updating the ensemble members... 3: Done. 3: 60% completed 3: Updating the ensemble members... 3: Done. 3: 60% completed 3: 70% completed 3: 70% completed 3: 70% completed 3: 80% completed 3: 80% completed 3: 80% completed 3: 90% completed 3: 90% completed 3: 90% completed 3: 100% completed 3: 100% completed 3: 100% completed 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 3040684us 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material" 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 3073428us 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material" 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 2756822us 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material" 3: Reading the experimental log file... 3: Done. Log entries found for 1 camera(s), with 1 frame(s). 3: Starting the main time stepping loop... 3: 10% completed 3: 20% completed 3: 30% completed 3: 40% completed 3: 50% completed 3: Rank: 1 | Old parameters for member 1: 3: Rank: 2 | Old parameters for member 2: 3: Performing data assimilation at time 0.12... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 1 | Number expt sites mapped to DOFs: 1 3: Rank: 2 | Number expt sites mapped to DOFs: 1 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Updating the ensemble members... 3: Done. 3: 60% completed 3: 70% completed 3: 80% completed 3: 90% completed 3: 100% completed 3: Reading the experimental log file... 3: Done. Log entries found for 1 camera(s), with 1 frame(s). 3: Reading the experimental log file... 3: Done. Log entries found for 1 camera(s), with 1 frame(s). 3: Reading the experimental log file... 3: Done. Log entries found for 1 camera(s), with 1 frame(s). 3: Starting the main time stepping loop... 3: Starting the main time stepping loop... 3: Starting the main time stepping loop... 3: 10% completed 3: 10% completed 3: 10% completed 3: 20% completed 3: 20% completed 3: 20% completed 3: 30% completed 3: 30% completed 3: 30% completed 3: 40% completed 3: 40% completed 3: 40% completed 3: 50% completed 3: 50% completed 3: 50% completed 3: Performing data assimilation at time 0.12... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 0 | Old parameters for member 1: 3: Rank: 0 | Old parameters for member 2: 3: Performing data assimilation at time 0.12... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 0 | Old parameters for member 1: 3: Rank: 0 | Old parameters for member 2: 3: Performing data assimilation at time 0.12... 3: Rank: 0 | Old parameters for member 0: 3: Rank: 0 | Old parameters for member 1: 3: Rank: 0 | Old parameters for member 2: 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Rank: 0 | Number expt sites mapped to DOFs: 1 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Getting the perturbed innovation... 3: Applying the Kalman gain... 3: Updating the ensemble members... 3: Updating the ensemble members... 3: Updating the ensemble members... 3: Done. 3: 60% completed 3: Done. 3: 60% completed 3: Done. 3: 60% completed 3: 70% completed 3: 70% completed 3: 70% completed 3: 80% completed 3: 80% completed 3: 80% completed 3: 90% completed 3: 90% completed 3: 90% completed 3: 100% completed 3: 100% completed 3: 100% completed 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2845468us 3: Leaving test module "Integration_Data_Assimilation"; testing time: 70816099us 3:  3: *** No errors detected 3:  3: *** No errors detected 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2924313us 3: Leaving test module "Integration_Data_Assimilation"; testing time: 70844536us 3:  3: *** No errors detected 3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2860886us 3: Leaving test module "Integration_Data_Assimilation"; testing time: 70835939us 3:  47/50 Test #3: test_integration_da_3 .................... Passed 72.23 sec test 4 Start 4: test_integration_da_6 4: Test command: /usr/bin/mpiexec "-n" "6" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_da" 4: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 4: Test timeout computed to be: 7200 4: Running 3 test cases... 4: Entering test module "Integration_Data_Assimilation" 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation" 4: Running 3 test cases... 4: Entering test module "Integration_Data_Assimilation" 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation" 4: Running 3 test cases... 4: Entering test module "Integration_Data_Assimilation" 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation" 4: Running 3 test cases... 4: Entering test module "Integration_Data_Assimilation" 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation" 4: Running 3 test cases... 4: Entering test module "Integration_Data_Assimilation" 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation" 4: Running 3 test cases... 4: Entering test module "Integration_Data_Assimilation" 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation" 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 2 frame(s). 4: Starting the main time stepping loop... 4: 10% completed 4: 20% completed 4: 30% completed 4: 40% completed 4: Rank: 2 | Old parameters for member 1: 4: Rank: 3 | Old parameters for member 1: 4: Rank: 2 | Number expt sites mapped to DOFs: 1 4: Rank: 3 | Number expt sites mapped to DOFs: 1 4: Rank: 1 | Old parameters for member 0: 4: Performing data assimilation at time 0.0211... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 4 | Old parameters for member 2: 4: Rank: 5 | Old parameters for member 2: 4: Rank: 1 | Number expt sites mapped to DOFs: 1 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Rank: 5 | Number expt sites mapped to DOFs: 1 4: Rank: 4 | Number expt sites mapped to DOFs: 1 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Updating the ensemble members... 4: Done. 4: 50% completed 4: 60% completed 4: Rank: 3 | Old parameters for member 1: 4: Rank: 2 | Old parameters for member 1: 4: Rank: 5 | Old parameters for member 2: 4: Rank: 4 | Old parameters for member 2: 4: Rank: 1 | Old parameters for member 0: 4: Performing data assimilation at time 0.0316... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 2 | Number expt sites mapped to DOFs: 1 4: Rank: 3 | Number expt sites mapped to DOFs: 1 4: Rank: 4 | Number expt sites mapped to DOFs: 1 4: Rank: 5 | Number expt sites mapped to DOFs: 1 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Rank: 1 | Number expt sites mapped to DOFs: 1 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Updating the ensemble members... 4: Done. 4: 70% completed 4: 80% completed 4: 90% completed 4: 100% completed 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 2 frame(s). 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 2 frame(s). 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 2 frame(s). 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 2 frame(s). 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 2 frame(s). 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 2 frame(s). 4: Starting the main time stepping loop... 4: Starting the main time stepping loop... 4: Starting the main time stepping loop... 4: Starting the main time stepping loop... 4: Starting the main time stepping loop... 4: Starting the main time stepping loop... 4: 10% completed 4: 10% completed 4: 10% completed 4: 10% completed 4: 10% completed 4: 10% completed 4: 20% completed 4: 20% completed 4: 20% completed 4: 20% completed 4: 20% completed 4: 20% completed 4: 30% completed 4: 30% completed 4: 30% completed 4: 30% completed 4: 30% completed 4: 30% completed 4: 40% completed 4: 40% completed 4: 40% completed 4: 40% completed 4: 40% completed 4: 40% completed 4: Performing data assimilation at time 0.0211... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Performing data assimilation at time 0.0211... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Performing data assimilation at time 0.0211... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Performing data assimilation at time 0.0211... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Performing data assimilation at time 0.0211... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Performing data assimilation at time 0.0211... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Updating the ensemble members... 4: Done. 4: Updating the ensemble members... 4: Done. 4: Updating the ensemble members... 4: Done. 4: Updating the ensemble members... 4: Done. 4: Updating the ensemble members... 4: Done. 4: Updating the ensemble members... 4: Done. 4: 50% completed 4: 50% completed 4: 50% completed 4: 50% completed 4: 50% completed 4: 50% completed 4: 60% completed 4: 60% completed 4: 60% completed 4: 60% completed 4: 60% completed 4: 60% completed 4: Performing data assimilation at time 0.0316... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Performing data assimilation at time 0.0316... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Performing data assimilation at time 0.0316... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Performing data assimilation at time 0.0316... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Performing data assimilation at time 0.0316... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Performing data assimilation at time 0.0316... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Updating the ensemble members... 4: Done. 4: Updating the ensemble members... 4: Updating the ensemble members... 4: Done. 4: Done. 4: Updating the ensemble members... 4: Done. 4: Updating the ensemble members... 4: Done. 4: Updating the ensemble members... 4: Done. 4: 70% completed 4: 70% completed 4: 70% completed 4: 70% completed 4: 70% completed 4: 70% completed 4: 80% completed 4: 80% completed 4: 80% completed 4: 80% completed 4: 80% completed 4: 80% completed 4: 90% completed 4: 90% completed 4: 90% completed 4: 90% completed 4: 90% completed 4: 90% completed 4: 100% completed 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 59308765us 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material" 4: 100% completed 4: 100% completed 4: 100% completed 4: 100% completed 4: 100% completed 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 59839474us 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material" 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 59899545us 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material" 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 60006329us 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material" 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 60047469us 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material" 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 60074193us 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material" 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 1 frame(s). 4: Starting the main time stepping loop... 4: 10% completed 4: 20% completed 4: 30% completed 4: 40% completed 4: 50% completed 4: Rank: 2 | Old parameters for member 1: 4: Rank: 3 | Old parameters for member 1: 4: Performing data assimilation at time 0.12... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 1 | Old parameters for member 0: 4: Rank: 5 | Old parameters for member 2: 4: Rank: 4 | Old parameters for member 2: 4: Rank: 3 | Number expt sites mapped to DOFs: 1 4: Rank: 2 | Number expt sites mapped to DOFs: 1 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Rank: 1 | Number expt sites mapped to DOFs: 1 4: Rank: 4 | Number expt sites mapped to DOFs: 1 4: Rank: 5 | Number expt sites mapped to DOFs: 1 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Updating the ensemble members... 4: Done. 4: 60% completed 4: 70% completed 4: 80% completed 4: 90% completed 4: 100% completed 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 1 frame(s). 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 1 frame(s). 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 1 frame(s). 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 1 frame(s). 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 1 frame(s). 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 1 frame(s). 4: Starting the main time stepping loop... 4: Starting the main time stepping loop... 4: Starting the main time stepping loop... 4: Starting the main time stepping loop... 4: Starting the main time stepping loop... 4: Starting the main time stepping loop... 4: 10% completed 4: 10% completed 4: 10% completed 4: 20% completed 4: 10% completed 4: 10% completed 4: 20% completed 4: 10% completed 4: 20% completed 4: 30% completed 4: 20% completed 4: 20% completed 4: 30% completed 4: 20% completed 4: 30% completed 4: 40% completed 4: 30% completed 4: 40% completed 4: 30% completed 4: 30% completed 4: 40% completed 4: 50% completed 4: 40% completed 4: 50% completed 4: 50% completed 4: 40% completed 4: 40% completed 4: Performing data assimilation at time 0.12... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: 50% completed 4: Performing data assimilation at time 0.12... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Performing data assimilation at time 0.12... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: 50% completed 4: 50% completed 4: Performing data assimilation at time 0.12... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Performing data assimilation at time 0.12... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Performing data assimilation at time 0.12... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Updating the ensemble members... 4: Done. 4: 60% completed 4: Updating the ensemble members... 4: Done. 4: 60% completed 4: Updating the ensemble members... 4: Done. 4: 60% completed 4: 70% completed 4: 70% completed 4: Updating the ensemble members... 4: Done. 4: 60% completed 4: 70% completed 4: 80% completed 4: Updating the ensemble members... 4: Done. 4: 60% completed 4: Updating the ensemble members... 4: Done. 4: 60% completed 4: 80% completed 4: 70% completed 4: 80% completed 4: 90% completed 4: 70% completed 4: 70% completed 4: 90% completed 4: 80% completed 4: 90% completed 4: 80% completed 4: 80% completed 4: 90% completed 4: 90% completed 4: 90% completed 4: 100% completed 4: 100% completed 4: 100% completed 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 2807991us 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material" 4: 100% completed 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 3442447us 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material" 4: 100% completed 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 2720963us 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material" 4: 100% completed 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 2748199us 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material" 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 2828441us 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material" 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 3005400us 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material" 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 1 frame(s). 4: Starting the main time stepping loop... 4: 10% completed 4: 20% completed 4: 30% completed 4: 40% completed 4: 50% completed 4: Rank: 5 | Old parameters for member 2: 4: Rank: 4 | Old parameters for member 2: 4: Rank: 2 | Old parameters for member 1: 4: Rank: 3 | Old parameters for member 1: 4: Performing data assimilation at time 0.12... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 1 | Old parameters for member 0: 4: Rank: 4 | Number expt sites mapped to DOFs: 1 4: Rank: 5 | Number expt sites mapped to DOFs: 1 4: Rank: 1 | Number expt sites mapped to DOFs: 1 4: Rank: 2 | Number expt sites mapped to DOFs: 1 4: Rank: 3 | Number expt sites mapped to DOFs: 1 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Updating the ensemble members... 4: Done. 4: 60% completed 4: 70% completed 4: 80% completed 4: 90% completed 4: 100% completed 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 1 frame(s). 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 1 frame(s). 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 1 frame(s). 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 1 frame(s). 4: Reading the experimental log file... 4: Reading the experimental log file... 4: Done. Log entries found for 1 camera(s), with 1 frame(s). 4: Done. Log entries found for 1 camera(s), with 1 frame(s). 4: Starting the main time stepping loop... 4: Starting the main time stepping loop... 4: Starting the main time stepping loop... 4: Starting the main time stepping loop... 4: Starting the main time stepping loop... 4: Starting the main time stepping loop... 4: 10% completed 4: 10% completed 4: 10% completed 4: 10% completed 4: 10% completed 4: 10% completed 4: 20% completed 4: 20% completed 4: 20% completed 4: 20% completed 4: 20% completed 4: 20% completed 4: 30% completed 4: 30% completed 4: 40% completed 4: 40% completed 4: 30% completed 4: 30% completed 4: 30% completed 4: 30% completed 4: 50% completed 4: 50% completed 4: 40% completed 4: 40% completed 4: 40% completed 4: 40% completed 4: Performing data assimilation at time 0.12... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Performing data assimilation at time 0.12... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: 50% completed 4: 50% completed 4: 50% completed 4: 50% completed 4: Performing data assimilation at time 0.12... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Performing data assimilation at time 0.12... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Performing data assimilation at time 0.12... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Performing data assimilation at time 0.12... 4: Rank: 0 | Old parameters for member 0: 4: Rank: 0 | Old parameters for member 1: 4: Rank: 0 | Old parameters for member 2: 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Rank: 0 | Number expt sites mapped to DOFs: 1 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Getting the perturbed innovation... 4: Applying the Kalman gain... 4: Updating the ensemble members... 4: Updating the ensemble members... 4: Done. 4: 60% completed 4: Done. 4: 60% completed 4: 70% completed 4: 70% completed 4: 80% completed 4: 80% completed 4: Updating the ensemble members... 4: Done. 4: 60% completed 4: Updating the ensemble members... 4: Done. 4: 60% completed 4: Updating the ensemble members... 4: Updating the ensemble members... 4: Done. 4: 60% completed 4: Done. 4: 60% completed 4: 90% completed 4: 90% completed 4: 70% completed 4: 70% completed 4: 70% completed 4: 70% completed 4: 80% completed 4: 80% completed 4: 80% completed 4: 80% completed 4: 90% completed 4: 90% completed 4: 90% completed 4: 90% completed 4: 100% completed 4: 100% completed 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2766015us 4: Leaving test module "Integration_Data_Assimilation"; testing time: 65517352us 4:  4: *** No errors detected 4:  4: *** No errors detected 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2813808us 4: Leaving test module "Integration_Data_Assimilation"; testing time: 65521474us 4: 100% completed 4: 100% completed 4: 100% completed 4: 100% completed 4: 4: *** No errors detected 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2932379us 4: Leaving test module "Integration_Data_Assimilation"; testing time: 65700957us 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2906081us 4: Leaving test module "Integration_Data_Assimilation"; testing time: 65751083us 4:  4: *** No errors detected 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2936462us 4: Leaving test module "Integration_Data_Assimilation"; testing time: 65759044us 4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2914984us 4: Leaving test module "Integration_Data_Assimilation"; testing time: 65749917us 4:  4: 4: *** No errors detected 4: *** No errors detected 4:  48/50 Test #4: test_integration_da_6 .................... Passed 67.74 sec test 7 Start 7: test_closest_source_point_adaptation_3 7: Test command: /usr/bin/mpiexec "-n" "3" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_closest_source_point_adaptation" 7: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 7: Test timeout computed to be: 7200 7: Running 1 test case... 7: Entering test module "ClosestSourcePointAdaptation" 7: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation" 7: Running 1 test case... 7: Entering test module "ClosestSourcePointAdaptation" 7: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation" 7: Running 1 test case... 7: Entering test module "ClosestSourcePointAdaptation" 7: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation" 7: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 7014111us 7: Leaving test module "ClosestSourcePointAdaptation"; testing time: 7014178us 7: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 7024913us 7: Leaving test module "ClosestSourcePointAdaptation"; testing time: 7024969us 7:  7: *** No errors detected 7:  7: *** No errors detected 7: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 7012804us 7: Leaving test module "ClosestSourcePointAdaptation"; testing time: 7012867us 7:  7: *** No errors detected 7:  49/50 Test #7: test_closest_source_point_adaptation_3 ... Passed 8.44 sec test 8 Start 8: test_closest_source_point_adaptation_6 8: Test command: /usr/bin/mpiexec "-n" "6" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_closest_source_point_adaptation" 8: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests 8: Test timeout computed to be: 7200 8: Running 1 test case... 8: Entering test module "ClosestSourcePointAdaptation" 8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation" 8: Running 1 test case... 8: Entering test module "ClosestSourcePointAdaptation" 8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation" 8: Running 1 test case... 8: Entering test module "ClosestSourcePointAdaptation" 8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation" 8: Running 1 test case... 8: Entering test module "ClosestSourcePointAdaptation" 8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation" 8: Running 1 test case... 8: Entering test module "ClosestSourcePointAdaptation" 8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation" 8: Running 1 test case... 8: Entering test module "ClosestSourcePointAdaptation" 8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation" 8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 4392266us 8: Leaving test module "ClosestSourcePointAdaptation"; testing time: 4392323us 8:  8: *** No errors detected 8:  8: *** No errors detected 8:  8: *** No errors detected 8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 4398755us 8: Leaving test module "ClosestSourcePointAdaptation"; testing time: 4398826us 8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 4397443us 8: Leaving test module "ClosestSourcePointAdaptation"; testing time: 4397496us 8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 4408277us 8: Leaving test module "ClosestSourcePointAdaptation"; testing time: 4408335us 8:  8: *** No errors detected 8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 4387468us 8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 4392916us 8: Leaving test module "ClosestSourcePointAdaptation"; testing time: 4392988us 8: Leaving test module "ClosestSourcePointAdaptation"; testing time: 4387532us 8: 8: *** No errors detected 8:  8: *** No errors detected 8:  50/50 Test #8: test_closest_source_point_adaptation_6 ... Passed 6.49 sec The following tests passed: test_closest_source_point_adaptation_1 test_data_assimilator_1 test_experimental_data_1 test_geometry_1 test_heat_source_1 test_integration_da_2 test_closest_source_point_adaptation_2 test_material_property_device_1 test_material_property_1 test_integration_da_1 test_post_processor_1 test_quaternion_1 test_scan_path_1 test_mechanical_operator_1 test_thermal_operator_1 test_thermal_operator_device_1 test_timer_1 test_utils_1 test_validate_input_database_1 test_thermal_physics_device_1 test_mechanical_physics_1 test_integration_2d_device_1 test_integration_2d_1 test_integration_3d_amr_1 test_integration_3d_amr_device_1 test_integration_da_augmented_1 test_integration_3d_device_1 test_material_deposition_1 test_microstructure_1 test_thermal_physics_1 test_ensemble_management_1 test_connected_components_1 test_connected_components_2 test_integration_2d_2 test_integration_2d_device_2 test_integration_3d_amr_2 test_integration_3d_amr_device_2 test_integration_da_augmented_2 test_material_deposition_2 test_microstructure_2 test_thermal_physics_2 test_ensemble_management_2 test_integration_3d_2 test_integration_da_3 test_integration_da_6 test_closest_source_point_adaptation_3 test_closest_source_point_adaptation_6 94% tests passed, 3 tests failed out of 50 Total Test time (real) = 13997.76 sec The following tests FAILED: 33 - test_integration_3d_1 (Timeout) 41 - test_integration_thermoelastic_1 (Timeout) 42 - test_integration_thermoelastic_2 (Failed) Errors while running CTest Output from these tests are in: /var/jenkins/workspace/adamantine-nightly/build/Testing/Temporary/LastTest.log Use "--rerun-failed --output-on-failure" to re-run the failed cases verbosely. [Pipeline] } [Pipeline] // dir Post stage [Pipeline] xunit INFO: Processing CTest-Version 3.x (default) [Pipeline] } [Pipeline] // withEnv [Pipeline] } $ docker stop --time=1 b18b7d4ffbf7140e166255232090717e57ca2131a79191f8a346cbeb91624c6a INFO: [CTest-Version 3.x (default)] - 1 test report file(s) were found with the pattern 'build/Testing/**/Test.xml' relative to '/var/jenkins/workspace/adamantine-nightly' for the testing framework 'CTest-Version 3.x (default)'. $ docker rm -f --volumes b18b7d4ffbf7140e166255232090717e57ca2131a79191f8a346cbeb91624c6a [Pipeline] // withDockerContainer [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] } [Pipeline] // stage [Pipeline] } Failed in branch CUDA [Pipeline] // parallel [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // timeout [Pipeline] } [Pipeline] // withEnv [Pipeline] End of Pipeline Also: org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: 9004f574-a69d-4bef-a677-d4c42899f191 Also: Also: org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: 8686e941-7280-498f-97e6-911a0277f828 hudson.AbortException: script returned exit code 8 at PluginClassLoader for workflow-durable-task-step//org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.handleExit(DurableTaskStep.java:689) at PluginClassLoader for workflow-durable-task-step//org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.check(DurableTaskStep.java:625) at PluginClassLoader for workflow-durable-task-step//org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.run(DurableTaskStep.java:566) at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) hudson.remoting.ChannelClosedException: Channel "unknown": Protocol stack cannot write data anymore. It is not open for write at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer$ByteBufferCommandTransport.write(ChannelApplicationLayer.java:338) at hudson.remoting.AbstractByteBufferCommandTransport.write(AbstractByteBufferCommandTransport.java:336) at hudson.remoting.Channel.send(Channel.java:829) at hudson.remoting.Request.call(Request.java:168) at hudson.remoting.Channel.call(Channel.java:1107) at hudson.FilePath.act(FilePath.java:1245) at hudson.FilePath.act(FilePath.java:1234) at hudson.FilePath.mkdirs(FilePath.java:1425) at PluginClassLoader for git//hudson.plugins.git.GitSCM.createClient(GitSCM.java:843) at PluginClassLoader for git//hudson.plugins.git.GitSCM._checkout(GitSCM.java:1299) at PluginClassLoader for git//hudson.plugins.git.GitSCM.checkout(GitSCM.java:1277) at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep.checkout(SCMStep.java:136) at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:101) at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:88) at PluginClassLoader for workflow-step-api//org.jenkinsci.plugins.workflow.steps.SynchronousNonBlockingStepExecution.lambda$start$0(SynchronousNonBlockingStepExecution.java:49) at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.base/java.lang.Thread.run(Unknown Source) Finished: FAILURE