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Checking out git https://github.com/adamantine-sim/adamantine into /var/jenkins_home/workspace/adamantine-nightly@script/769419fd3c5a9c81c4beafaeab26398461553595cef1aaea2775372c607f95c5 to read ci/nightly.groovy
Selected Git installation does not exist. Using Default
The recommended git tool is: NONE
using credential e7df5eb2-574e-4ec2-98aa-f2e31f069fb4
 > git rev-parse --resolve-git-dir /var/jenkins_home/workspace/adamantine-nightly@script/769419fd3c5a9c81c4beafaeab26398461553595cef1aaea2775372c607f95c5/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/adamantine-sim/adamantine # timeout=10
Fetching upstream changes from https://github.com/adamantine-sim/adamantine
 > git --version # timeout=10
 > git --version # 'git version 2.47.3'
using GIT_ASKPASS to set credentials Jenkins Bruno
 > git fetch --tags --force --progress -- https://github.com/adamantine-sim/adamantine +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision c6d64a7b6447d17915532b3254cd87988fbf16ba (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f c6d64a7b6447d17915532b3254cd87988fbf16ba # timeout=10
Commit message: "Save the plastic strain instead of the stress (#515)"
 > git rev-list --no-walk c6d64a7b6447d17915532b3254cd87988fbf16ba # timeout=10
[Pipeline] Start of Pipeline
[Pipeline] withEnv
[Pipeline] {
[Pipeline] timeout
Timeout set to expire in 6 hr 0 min
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Test)
[Pipeline] parallel
[Pipeline] { (Branch: CPU)
[Pipeline] { (Branch: CUDA)
[Pipeline] stage
[Pipeline] { (CPU)
[Pipeline] stage
[Pipeline] { (CUDA)
[Pipeline] node
[Pipeline] node
Running on lascaux_02 in /var/jenkins/workspace/adamantine-nightly
Running on waffle_03 in /var/jenkins/workspace/adamantine-nightly
[Pipeline] {
[Pipeline] {
[Pipeline] checkout
ERROR: Checkout failed
hudson.remoting.ChannelClosedException: Channel "unknown": Protocol stack cannot write data anymore. It is not open for write
	at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer$ByteBufferCommandTransport.write(ChannelApplicationLayer.java:338)
	at hudson.remoting.AbstractByteBufferCommandTransport.write(AbstractByteBufferCommandTransport.java:336)
	at hudson.remoting.Channel.send(Channel.java:829)
	at hudson.remoting.Request.call(Request.java:168)
	at hudson.remoting.Channel.call(Channel.java:1107)
	at hudson.FilePath.act(FilePath.java:1245)
	at hudson.FilePath.act(FilePath.java:1234)
	at hudson.FilePath.mkdirs(FilePath.java:1425)
	at PluginClassLoader for git//hudson.plugins.git.GitSCM.createClient(GitSCM.java:843)
	at PluginClassLoader for git//hudson.plugins.git.GitSCM._checkout(GitSCM.java:1299)
	at PluginClassLoader for git//hudson.plugins.git.GitSCM.checkout(GitSCM.java:1277)
	at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep.checkout(SCMStep.java:136)
	at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:101)
	at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:88)
	at PluginClassLoader for workflow-step-api//org.jenkinsci.plugins.workflow.steps.SynchronousNonBlockingStepExecution.lambda$start$0(SynchronousNonBlockingStepExecution.java:49)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
	at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
	at java.base/java.lang.Thread.run(Unknown Source)
ERROR: Maximum checkout retry attempts reached, aborting
[Pipeline] checkout
Selected Git installation does not exist. Using Default
The recommended git tool is: NONE
using credential e7df5eb2-574e-4ec2-98aa-f2e31f069fb4
[Pipeline] }
Fetching changes from the remote Git repository
[Pipeline] // node
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
Failed in branch CPU
Checking out Revision c6d64a7b6447d17915532b3254cd87988fbf16ba (refs/remotes/origin/master)
Commit message: "Save the plastic strain instead of the stress (#515)"
 > git rev-parse --resolve-git-dir /var/jenkins/workspace/adamantine-nightly/.git # timeout=10
 > git config remote.origin.url https://github.com/adamantine-sim/adamantine # timeout=10
Fetching upstream changes from https://github.com/adamantine-sim/adamantine
 > git --version # timeout=10
 > git --version # 'git version 2.43.0'
using GIT_ASKPASS to set credentials Jenkins Bruno
 > git fetch --tags --force --progress -- https://github.com/adamantine-sim/adamantine +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f c6d64a7b6447d17915532b3254cd87988fbf16ba # timeout=10
[Pipeline] withEnv
[Pipeline] {
[Pipeline] isUnix
[Pipeline] withEnv
[Pipeline] {
[Pipeline] sh
+ docker inspect -f . rombur/adamantine-stack:latest
.
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] withDockerContainer
waffle_03 seems to be running inside container c3e00df1f7144af5327c0036cc8bf4478bd78552ed1b82c7a130605c1dd63855
$ docker run -t -d -u 0:0 -w /var/jenkins/workspace/adamantine-nightly --volumes-from c3e00df1f7144af5327c0036cc8bf4478bd78552ed1b82c7a130605c1dd63855 -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** rombur/adamantine-stack:latest cat
$ docker top b18b7d4ffbf7140e166255232090717e57ca2131a79191f8a346cbeb91624c6a -eo pid,comm
ERROR: The container started but didn't run the expected command. Please double check your ENTRYPOINT does execute the command passed as docker run argument, as required by official docker images (see https://github.com/docker-library/official-images#consistency for entrypoint consistency requirements).
Alternatively you can force image entrypoint to be disabled by adding option `--entrypoint=''`.
[Pipeline] {
[Pipeline] withEnv
[Pipeline] {
[Pipeline] sh
+ rm -rf build
+ mkdir -p build
[Pipeline] dir
Running in /var/jenkins/workspace/adamantine-nightly/build
[Pipeline] {
[Pipeline] sh
-- Using the deal.II-9.6.2 installation found at /opt/dealii
-- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_add_test.cmake
-- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_initialize_cached_variables.cmake
-- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_invoke_autopilot.cmake
-- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_pickup_tests.cmake
-- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_query_git_information.cmake
-- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_setup_target.cmake
-- Include macro /opt/dealii/share/deal.II/macros/macro_shell_escape_option_groups.cmake
-- Include macro /opt/dealii/share/deal.II/macros/macro_target_compile_flags.cmake
-- Include macro /opt/dealii/share/deal.II/macros/macro_target_link_flags.cmake
-- The CXX compiler identification is GNU 13.3.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /opt/trilinos/bin/nvcc_wrapper - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") 
-- Found MPI: TRUE (found version "3.1")  
-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70.0") found components: chrono program_options timer unit_test_framework 
-- Build type: Debug
-- Configuring done (15.4s)
-- Generating done (3.6s)
-- Build files have been written to: /var/jenkins/workspace/adamantine-nightly/build
[Pipeline] sh
+ make -j8
[  0%] Building CXX object source/CMakeFiles/Adamantine.dir/BodyForce.cc.o
[  2%] Copying bare_plate_L_da_aug_ref_data_0_0.csv
[  3%] Copying bare_plate_L_da.info
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[  5%] Copying analytical_1D_transient.py
[  5%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_da.info
[  5%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_da_aug_ref_data_0_0.csv
[  6%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_da_augmented.info
[  6%] Building CXX object source/CMakeFiles/Adamantine.dir/Boundary.cc.o
[  6%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_analytical_1D_transient.py
[  6%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_da_aug_ref_data_0_1.csv
[  6%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_amr_test.info
[  6%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_da_aug_ref_log.txt
[  6%] Copying bare_plate_L_ensemble.info
[  7%] Copying bare_plate_L_scan_path.txt
[  7%] Copying bare_plate_L_expt_data_0_1.csv
[  7%] Copying bare_plate_L_expt_data_0_0.csv
[  9%] Copying bare_plate_L_expt_log.txt
[  9%] Copying bare_plate_L_scan_path_fast.txt
[  9%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_ensemble.info
[ 10%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_expt_data_0_1.csv
[ 10%] Copying convective_bc_gold.txt
[ 10%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_scan_path.txt
[ 10%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_expt_data_0_0.csv
[ 10%] Building CXX object source/CMakeFiles/Adamantine.dir/CubeHeatSource.cc.o
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[ 11%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_expt_log.txt
[ 11%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_bare_plate_L_scan_path_fast.txt
[ 11%] Copying demo_316_short.info
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[ 12%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_demo_316_short.info
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[ 12%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_convective_bc_gold.txt
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[ 12%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_demo_316_short_anisotropic.info
[ 13%] Copying demo_316_short_scan_path.txt
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[ 13%] Copying demo_316_short_scan_path_amr.txt
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[ 14%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_demo_316_short_scan_path.txt
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[ 22%] Building CXX object source/CMakeFiles/Adamantine.dir/RayTracing.cc.o
[ 23%] Building CXX object source/CMakeFiles/Adamantine.dir/ScanPath.cc.o
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[ 32%] Building CXX object source/CMakeFiles/Adamantine.dir/experimental_data_utils.cc.o
[ 33%] Building CXX object source/CMakeFiles/Adamantine.dir/material_deposition.cc.o
[ 33%] Building CXX object source/CMakeFiles/Adamantine.dir/validate_input_database.cc.o
[ 33%] Copying extruded_cube.msh
[ 33%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_extruded_cube.msh
[ 34%] Copying hexahedra.msh
[ 34%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_hexahedra.msh
[ 35%] Copying five_axis.info
[ 35%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_five_axis.info
[ 35%] Copying five_axis_scan_path.txt
[ 36%] Copying HourGlass_AOP.info
[ 36%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_five_axis_scan_path.txt
[ 36%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_HourGlass_AOP.info
[ 36%] Copying HourGlass_AOP.vtk
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[ 37%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_HourGlass_AOP.vtk
[ 37%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_HourGlass_AOP_scan_path.txt
[ 37%] Copying integration_2d.info
[ 38%] Copying integration_2d_ensemble.info
[ 38%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_2d.info
[ 39%] Copying integration_2d_gold.txt
[ 39%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_2d_ensemble.info
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[ 39%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_2d_gold.txt
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[ 40%] Copying integration_3d_gold.txt
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[ 40%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold.txt
[ 40%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold_0.txt
[ 41%] Copying integration_3d_gold_1.txt
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[ 41%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold_1.txt
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[ 42%] Copying integration_3d_gold_five_axis_0.txt
[ 43%] Copying integration_3d_gold_five_axis_1.txt
[ 43%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold_five_axis_0.txt
[ 43%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold_five_axis_1.txt
[ 43%] Copying integration_3d_gold_short.txt
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[ 44%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold_short.txt
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[ 44%] Copying integration_3d_gold_short_1.txt
[ 45%] Copying integration_da_add_material.info
[ 45%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_3d_gold_short_1.txt
[ 45%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_da_add_material.info
[ 45%] Copying integration_da_add_material_expt_log.txt
[ 46%] Copying integration_da_add_material_expt_pc_0_0.csv
[ 46%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_da_add_material_expt_log.txt
[ 46%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_da_add_material_expt_pc_0_0.csv
[ 47%] Copying integration_da_add_material_expt_ray_0_0.csv
[ 47%] Copying integration_da_add_material_sp.txt
[ 47%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_da_add_material_expt_ray_0_0.csv
[ 47%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_integration_da_add_material_sp.txt
[ 48%] Copying material_deposition_2d.txt
[ 48%] Copying material_deposition_3d.txt
[ 48%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_material_deposition_3d.txt
[ 48%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_material_deposition_2d.txt
[ 49%] Copying material_path_test_material_deposition.txt
[ 50%] Copying material_property_polynomial.info
[ 50%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_material_path_test_material_deposition.txt
[ 50%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_material_property_polynomial.info
[ 50%] Copying material_property_table.info
[ 51%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_material_property_table.info
[ 51%] Copying microstructure_G_R_gold_1.txt
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[ 51%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_microstructure_G_R_gold_1.txt
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[ 52%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_raytracing_experimental_data_0_0.csv
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[ 53%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_rays_cam-0-0_test_full.csv
[ 53%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_raytracing_non_AA_cells-0-0.csv
[ 54%] Copying scan_path.txt
[ 54%] Copying scan_path_5_axis.txt
[ 54%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path_5_axis.txt
[ 54%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path.txt
[ 55%] Copying scan_path_diagonal.txt
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[ 55%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path_arcs.txt
[ 55%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path_diagonal.txt
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[ 56%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path_event_series.inp
[ 56%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path_L.txt
[ 58%] Copying scan_path_test_thermal_physics.txt
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[ 58%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path_layers.txt
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[ 58%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_scan_path_units.txt
[ 58%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_Simple_3D_ring.stl
[ 58%] Copying thermoelastic_bare_plate_add_material_scan_path.txt
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[ 59%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_thermoelastic_bare_plate_add_material_scan_path.txt
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[ 60%] Copying thermoelastic_bare_plate_scan_path.txt
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[ 60%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_within_stl_gold.txt
[ 60%] Built target _var_jenkins_workspace_adamantine-nightly_build_bin_thermoelastic_bare_plate_scan_path.txt
[ 60%] Built target Adamantine
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[ 72%] Building CXX object tests/CMakeFiles/test_post_processor.dir/test_post_processor.cc.o
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[Pipeline] sh
+ ctest -j4 -V --timeout 7200 --no-compress-output -R test_ -T Test
UpdateCTestConfiguration  from :/var/jenkins/workspace/adamantine-nightly/build/DartConfiguration.tcl
Parse Config file:/var/jenkins/workspace/adamantine-nightly/build/DartConfiguration.tcl
   Site: b18b7d4ffbf7
   Build name: Linux-nvcc_wrapper
Create new tag: 20261108-0611 - Experimental
UpdateCTestConfiguration  from :/var/jenkins/workspace/adamantine-nightly/build/DartConfiguration.tcl
Parse Config file:/var/jenkins/workspace/adamantine-nightly/build/DartConfiguration.tcl
Test project /var/jenkins/workspace/adamantine-nightly/build
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
      Start  1: test_integration_da_1

1: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_da"
1: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
1: Test timeout computed to be: 7200
test 2
      Start  2: test_integration_da_2

2: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_da"
2: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
2: Test timeout computed to be: 7200
test 5
      Start  5: test_closest_source_point_adaptation_1

5: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_closest_source_point_adaptation"
5: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
5: Test timeout computed to be: 7200
2: Running 3 test cases...
2: Entering test module "Integration_Data_Assimilation"
2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation"
2: Running 3 test cases...
2: Entering test module "Integration_Data_Assimilation"
2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation"
1: Running 3 test cases...
1: Entering test module "Integration_Data_Assimilation"
1: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation"
5: Running 1 test case...
5: Entering test module "ClosestSourcePointAdaptation"
5: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation"
2: Reading the experimental log file...
2: Done. Log entries found for 1 camera(s), with 2 frame(s).
2: Starting the main time stepping loop...
1: Reading the experimental log file...
1: Done. Log entries found for 1 camera(s), with 2 frame(s).
1: Starting the main time stepping loop...
2: Rank: 1 | Old parameters for member 2: 
2: Rank: 1 | Number expt sites mapped to DOFs: 1
2: 10% completed
1: 10% completed
2: 20% completed
2: 30% completed
1: 20% completed
2: 40% completed
2: Performing data assimilation at time 0.0211...
2: Rank: 0 | Old parameters for member 0: 
2: Rank: 0 | Old parameters for member 1: 
2: Rank: 0 | Number expt sites mapped to DOFs: 1
1: 30% completed
5: 
5: *** No errors detected
5: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 32132350us
5: Leaving test module "ClosestSourcePointAdaptation"; testing time: 32132397us
5: 
 1/50 Test  #5: test_closest_source_point_adaptation_1 ...   Passed   37.03 sec
test 9
      Start  9: test_data_assimilator_1

9: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_data_assimilator"
9: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
9: Test timeout computed to be: 7200
2: Getting the perturbed innovation...
2: Applying the Kalman gain...
1: 40% completed
9: Running 1 test case...
9: Entering test module "DataAssimilator"
9: /var/jenkins/workspace/adamantine-nightly/tests/test_data_assimilator.cc(948): Entering test case "data_assimilator"
9: Getting the perturbed innovation...
9: Applying the Kalman gain...
9: Updating the ensemble members...
9: Getting the perturbed innovation...
9: Applying the Kalman gain...
9: Updating the ensemble members...
9: /var/jenkins/workspace/adamantine-nightly/tests/test_data_assimilator.cc(948): Leaving test case "data_assimilator"; testing time: 1026729us
9: Leaving test module "DataAssimilator"; testing time: 1026765us
9: 
9: *** No errors detected
2: Updating the ensemble members...
2: Done.
9: 
 2/50 Test  #9: test_data_assimilator_1 ..................   Passed    5.49 sec
test 10
      Start 10: test_experimental_data_1

10: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_experimental_data"
10: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
10: Test timeout computed to be: 7200
1: Performing data assimilation at time 0.0211...
1: Rank: 0 | Old parameters for member 0: 
1: Rank: 0 | Old parameters for member 1: 
1: Rank: 0 | Old parameters for member 2: 
1: Rank: 0 | Number expt sites mapped to DOFs: 1
2: Rank: 1 | Old parameters for member 2: 
2: Rank: 1 | Number expt sites mapped to DOFs: 1
10: Running 6 test cases...
10: Entering test module "ExperimentaData"
10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(22): Entering test case "read_experimental_data_point_cloud_from_file"
10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(22): Leaving test case "read_experimental_data_point_cloud_from_file"; testing time: 231296us
10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(75): Entering test case "set_vector_with_experimental_data_point_cloud"
10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(75): Leaving test case "set_vector_with_experimental_data_point_cloud"; testing time: 149953us
10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(138): Entering test case "read_experimental_data_ray_tracing_from_file"
10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(138): Leaving test case "read_experimental_data_ray_tracing_from_file"; testing time: 170330us
10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(199): Entering test case "timestamp"
10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(199): Leaving test case "timestamp"; testing time: 23813us
10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(225): Entering test case "project_ray_data_on_mesh"
2: 50% completed
1: Getting the perturbed innovation...
1: Applying the Kalman gain...
2: 60% completed
1: Updating the ensemble members...
1: Done.
2: Performing data assimilation at time 0.0316...
2: Rank: 0 | Old parameters for member 0: 
2: Rank: 0 | Old parameters for member 1: 
2: Rank: 0 | Number expt sites mapped to DOFs: 1
1: 50% completed
2: Getting the perturbed innovation...
2: Applying the Kalman gain...
2: Updating the ensemble members...
2: Done.
1: 60% completed
2: 70% completed
1: Performing data assimilation at time 0.0316...
1: Rank: 0 | Old parameters for member 0: 
1: Rank: 0 | Old parameters for member 1: 
1: Rank: 0 | Old parameters for member 2: 
1: Rank: 0 | Number expt sites mapped to DOFs: 1
2: 80% completed
1: Getting the perturbed innovation...
1: Applying the Kalman gain...
2: 90% completed
1: Updating the ensemble members...
1: Done.
2: 100% completed
2: Reading the experimental log file...
2: Done. Log entries found for 1 camera(s), with 2 frame(s).
2: Starting the main time stepping loop...
2: Reading the experimental log file...
2: Done. Log entries found for 1 camera(s), with 2 frame(s).
2: Starting the main time stepping loop...
1: 70% completed
2: 10% completed
2: 20% completed
2: 30% completed
2: 40% completed
1: 80% completed
2: Performing data assimilation at time 0.0211...
2: Rank: 0 | Old parameters for member 0: 
2: Rank: 0 | Old parameters for member 1: 
2: Rank: 0 | Old parameters for member 2: 
2: Rank: 0 | Number expt sites mapped to DOFs: 1
2: 10% completed
2: Getting the perturbed innovation...
2: Applying the Kalman gain...
2: Updating the ensemble members...
2: Done.
2: 50% completed
1: 90% completed
2: 20% completed
2: 60% completed
2: Performing data assimilation at time 0.0316...
2: Rank: 0 | Old parameters for member 0: 
2: Rank: 0 | Old parameters for member 1: 
2: Rank: 0 | Old parameters for member 2: 
2: Rank: 0 | Number expt sites mapped to DOFs: 1
2: Getting the perturbed innovation...
2: Applying the Kalman gain...
2: 30% completed
2: Updating the ensemble members...
2: Done.
1: 100% completed
2: 70% completed
1: Reading the experimental log file...
1: Done. Log entries found for 1 camera(s), with 2 frame(s).
2: 80% completed
1: Starting the main time stepping loop...
2: 40% completed
2: 90% completed
2: Performing data assimilation at time 0.0211...
2: Rank: 0 | Old parameters for member 0: 
2: Rank: 0 | Old parameters for member 1: 
2: Rank: 0 | Old parameters for member 2: 
2: Rank: 0 | Number expt sites mapped to DOFs: 1
2: 100% completed
2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 141299212us
2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material"
10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(225): Leaving test case "project_ray_data_on_mesh"; testing time: 102321758us
10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(302): Entering test case "project_ray_data_on_nonaligned_mesh"
10: 
10: *** No errors detected
10: /var/jenkins/workspace/adamantine-nightly/tests/test_experimental_data.cc(302): Leaving test case "project_ray_data_on_nonaligned_mesh"; testing time: 277937us
10: Leaving test module "ExperimentaData"; testing time: 103176201us
2: Getting the perturbed innovation...
2: Applying the Kalman gain...
1: 10% completed
10: 
 3/50 Test #10: test_experimental_data_1 .................   Passed  107.09 sec
test 11
      Start 11: test_geometry_1

11: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_geometry"
11: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
11: Test timeout computed to be: 7200
11: Running 6 test cases...
11: Entering test module "Geometry"
11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(61): Entering test case "geometry_2D"
11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(61): Leaving test case "geometry_2D"; testing time: 67698us
11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(86): Entering test case "geometry_3D"
11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(86): Leaving test case "geometry_3D"; testing time: 96177us
11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(113): Entering test case "geometry_shifted_origin"
11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(113): Leaving test case "geometry_shifted_origin"; testing time: 119108us
11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(148): Entering test case "gmsh"
11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(148): Leaving test case "gmsh"; testing time: 377459us
11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(171): Entering test case "read_stl"
11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(171): Leaving test case "read_stl"; testing time: 132224us
11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(232): Entering test case "geometry_stl_mesh"
11: /var/jenkins/workspace/adamantine-nightly/tests/test_geometry.cc(232): Leaving test case "geometry_stl_mesh"; testing time: 77428us
11: Leaving test module "Geometry"; testing time: 871442us
11: 
11: *** No errors detected
2: Updating the ensemble members...
2: Done.
11: 
 4/50 Test #11: test_geometry_1 ..........................   Passed    4.37 sec
test 12
      Start 12: test_heat_source_1

12: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_heat_source"
12: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
12: Test timeout computed to be: 7200
1: 20% completed
12: Running 6 test cases...
12: Entering test module "HeatSource"
12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(104): Entering test case "gaussian_heat_source_value_2d"
12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(104): Leaving test case "gaussian_heat_source_value_2d"; testing time: 33035us
12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(109): Entering test case "gaussian_heat_source_value_3d"
12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(109): Leaving test case "gaussian_heat_source_value_3d"; testing time: 242us
12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(114): Entering test case "heat_source_value_2d"
12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(114): Leaving test case "heat_source_value_2d"; testing time: 301us
12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(190): Entering test case "heat_source_vectorized_value_2d"
12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(190): Leaving test case "heat_source_vectorized_value_2d"; testing time: 270us
12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(315): Entering test case "heat_source_value_3d"
12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(315): Leaving test case "heat_source_value_3d"; testing time: 296us
12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(381): Entering test case "heat_source_vectorized_value_3d"
12: /var/jenkins/workspace/adamantine-nightly/tests/test_heat_source.cc(381): Leaving test case "heat_source_vectorized_value_3d"; testing time: 266us
12: Leaving test module "HeatSource"; testing time: 35672us
12: 
12: *** No errors detected
12: 
 5/50 Test #12: test_heat_source_1 .......................   Passed    3.81 sec
test 13
      Start 13: test_integration_3d_device_1

13: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_3d_device"
13: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
13: Test timeout computed to be: 7200
13: Running 2 test cases...
13: Entering test module "Integration_3D_Device"
13: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_device.cc(19): Entering test case "integration_3D_device"
2: 50% completed
1: 30% completed
1: 40% completed
2: 60% completed
1: Performing data assimilation at time 0.0211...
1: Rank: 0 | Old parameters for member 0: 
1: Rank: 0 | Old parameters for member 1: 
1: Rank: 0 | Old parameters for member 2: 
1: Rank: 0 | Number expt sites mapped to DOFs: 1
2: Performing data assimilation at time 0.0316...
2: Rank: 0 | Old parameters for member 0: 
2: Rank: 0 | Old parameters for member 1: 
2: Rank: 0 | Old parameters for member 2: 
2: Rank: 0 | Number expt sites mapped to DOFs: 1
1: Getting the perturbed innovation...
1: Applying the Kalman gain...
2: Getting the perturbed innovation...
2: Applying the Kalman gain...
1: Updating the ensemble members...
1: Done.
2: Updating the ensemble members...
2: Done.
1: 50% completed
2: 70% completed
1: 60% completed
2: 80% completed
1: Performing data assimilation at time 0.0316...
1: Rank: 0 | Old parameters for member 0: 
1: Rank: 0 | Old parameters for member 1: 
1: Rank: 0 | Old parameters for member 2: 
1: Rank: 0 | Number expt sites mapped to DOFs: 1
2: 90% completed
1: Getting the perturbed innovation...
1: Applying the Kalman gain...
1: Updating the ensemble members...
1: Done.
2: 100% completed
2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 229149929us
2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material"
2: Reading the experimental log file...
2: Done. Log entries found for 1 camera(s), with 1 frame(s).
2: Starting the main time stepping loop...
2: Rank: 1 | Old parameters for member 2: 
2: Rank: 1 | Number expt sites mapped to DOFs: 1
2: 10% completed
2: 20% completed
1: 70% completed
2: 30% completed
2: 40% completed
2: 50% completed
2: Performing data assimilation at time 0.12...
2: Rank: 0 | Old parameters for member 0: 
2: Rank: 0 | Old parameters for member 1: 
2: Rank: 0 | Number expt sites mapped to DOFs: 1
2: Getting the perturbed innovation...
2: Applying the Kalman gain...
2: Updating the ensemble members...
2: Done.
2: 60% completed
2: 70% completed
2: 80% completed
2: 90% completed
2: 100% completed
2: Reading the experimental log file...
2: Done. Log entries found for 1 camera(s), with 1 frame(s).
2: Starting the main time stepping loop...
2: 10% completed
2: 20% completed
2: 30% completed
2: 40% completed
2: 50% completed
2: Performing data assimilation at time 0.12...
2: Rank: 0 | Old parameters for member 0: 
2: Rank: 0 | Old parameters for member 1: 
2: Rank: 0 | Old parameters for member 2: 
2: Rank: 0 | Number expt sites mapped to DOFs: 1
2: Getting the perturbed innovation...
2: Applying the Kalman gain...
2: Updating the ensemble members...
2: Done.
2: 60% completed
2: 70% completed
2: 80% completed
2: 90% completed
2: Reading the experimental log file...
2: Done. Log entries found for 1 camera(s), with 1 frame(s).
1: 80% completed
2: 100% completed
2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 98796478us
2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material"
2: Starting the main time stepping loop...
2: 10% completed
2: 20% completed
2: 30% completed
2: 40% completed
2: 50% completed
2: Performing data assimilation at time 0.12...
2: Rank: 0 | Old parameters for member 0: 
2: Rank: 0 | Old parameters for member 1: 
2: Rank: 0 | Old parameters for member 2: 
2: Rank: 0 | Number expt sites mapped to DOFs: 1
2: Getting the perturbed innovation...
2: Applying the Kalman gain...
2: Updating the ensemble members...
2: Done.
2: 60% completed
2: 70% completed
2: 80% completed
1: 90% completed
2: 90% completed
2: 100% completed
2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 21095498us
2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material"
2: Reading the experimental log file...
2: Done. Log entries found for 1 camera(s), with 1 frame(s).
2: Starting the main time stepping loop...
2: Rank: 1 | Old parameters for member 2: 
2: Rank: 1 | Number expt sites mapped to DOFs: 1
2: 10% completed
2: 20% completed
2: 30% completed
2: 40% completed
2: 50% completed
2: Performing data assimilation at time 0.12...
2: Rank: 0 | Old parameters for member 0: 
2: Rank: 0 | Old parameters for member 1: 
2: Rank: 0 | Number expt sites mapped to DOFs: 1
2: Getting the perturbed innovation...
2: Applying the Kalman gain...
2: Updating the ensemble members...
2: Done.
2: 60% completed
2: 70% completed
1: 100% completed
2: 80% completed
2: 90% completed
1: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 257568543us
1: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material"
2: 100% completed
1: Reading the experimental log file...
1: Done. Log entries found for 1 camera(s), with 1 frame(s).
2: Reading the experimental log file...
2: Done. Log entries found for 1 camera(s), with 1 frame(s).
2: Starting the main time stepping loop...
1: Starting the main time stepping loop...
2: 10% completed
2: 20% completed
2: 30% completed
2: 40% completed
2: 50% completed
2: Performing data assimilation at time 0.12...
2: Rank: 0 | Old parameters for member 0: 
2: Rank: 0 | Old parameters for member 1: 
2: Rank: 0 | Old parameters for member 2: 
2: Rank: 0 | Number expt sites mapped to DOFs: 1
2: Getting the perturbed innovation...
2: Applying the Kalman gain...
2: Reading the experimental log file...
2: Done. Log entries found for 1 camera(s), with 1 frame(s).
2: Updating the ensemble members...
2: Done.
2: 60% completed
2: 70% completed
2: 80% completed
2: 90% completed
2: Starting the main time stepping loop...
1: 10% completed
2: 100% completed
2: 
2: *** No errors detected
2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 20787557us
2: Leaving test module "Integration_Data_Assimilation"; testing time: 260883405us
1: 20% completed
1: 30% completed
1: 40% completed
2: 10% completed
1: 50% completed
2: 20% completed
1: Performing data assimilation at time 0.12...
1: Rank: 0 | Old parameters for member 0: 
1: Rank: 0 | Old parameters for member 1: 
1: Rank: 0 | Old parameters for member 2: 
1: Rank: 0 | Number expt sites mapped to DOFs: 1
2: 30% completed
1: Getting the perturbed innovation...
1: Applying the Kalman gain...
2: 40% completed
1: Updating the ensemble members...
1: Done.
1: 60% completed
2: 50% completed
1: 70% completed
2: Performing data assimilation at time 0.12...
2: Rank: 0 | Old parameters for member 0: 
2: Rank: 0 | Old parameters for member 1: 
2: Rank: 0 | Old parameters for member 2: 
2: Rank: 0 | Number expt sites mapped to DOFs: 1
1: 80% completed
2: Getting the perturbed innovation...
2: Applying the Kalman gain...
1: 90% completed
2: Updating the ensemble members...
2: Done.
2: 60% completed
2: 70% completed
2: 80% completed
2: 90% completed
1: 100% completed
2: 100% completed
2: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 17794776us
2: Leaving test module "Integration_Data_Assimilation"; testing time: 268040329us
2: 
2: *** No errors detected
1: Reading the experimental log file...
1: Done. Log entries found for 1 camera(s), with 1 frame(s).
2: 
 6/50 Test  #2: test_integration_da_2 ....................   Passed  272.66 sec
test 6
      Start  6: test_closest_source_point_adaptation_2

6: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_closest_source_point_adaptation"
6: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
6: Test timeout computed to be: 7200
1: Starting the main time stepping loop...
1: 10% completed
1: 20% completed
6: Running 1 test case...
6: Entering test module "ClosestSourcePointAdaptation"
6: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation"
1: 30% completed
6: Running 1 test case...
6: Entering test module "ClosestSourcePointAdaptation"
6: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation"
1: 40% completed
1: 50% completed
1: Performing data assimilation at time 0.12...
1: Rank: 0 | Old parameters for member 0: 
1: Rank: 0 | Old parameters for member 1: 
1: Rank: 0 | Old parameters for member 2: 
1: Rank: 0 | Number expt sites mapped to DOFs: 1
1: Getting the perturbed innovation...
1: Applying the Kalman gain...
1: Updating the ensemble members...
1: Done.
1: 60% completed
1: 70% completed
1: 80% completed
1: 90% completed
1: 100% completed
1: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 20217273us
1: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material"
1: Reading the experimental log file...
1: Done. Log entries found for 1 camera(s), with 1 frame(s).
1: Starting the main time stepping loop...
1: 10% completed
13: 10% completed
1: 20% completed
1: 30% completed
1: 40% completed
1: 50% completed
1: Performing data assimilation at time 0.12...
1: Rank: 0 | Old parameters for member 0: 
1: Rank: 0 | Old parameters for member 1: 
1: Rank: 0 | Old parameters for member 2: 
1: Rank: 0 | Number expt sites mapped to DOFs: 1
1: Getting the perturbed innovation...
1: Applying the Kalman gain...
1: Updating the ensemble members...
1: Done.
1: 60% completed
1: 70% completed
1: 80% completed
1: 90% completed
6: 
6: *** No errors detected
6: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 19030708us
6: Leaving test module "ClosestSourcePointAdaptation"; testing time: 19030770us
6: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 18864210us
6: Leaving test module "ClosestSourcePointAdaptation"; testing time: 18864258us
6: 
6: *** No errors detected
6: 
 7/50 Test  #6: test_closest_source_point_adaptation_2 ...   Passed   21.36 sec
test 14
      Start 14: test_material_property_1

14: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_material_property"
14: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
14: Test timeout computed to be: 7200
test 15
      Start 15: test_material_property_device_1

15: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_material_property_device"
15: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
15: Test timeout computed to be: 7200
1: 100% completed
15: Running 4 test cases...
15: Entering test module "MaterialPropertyDevice"
15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(13): Entering test case "material_property_device"
1: Reading the experimental log file...
1: Done. Log entries found for 1 camera(s), with 1 frame(s).
15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(13): Leaving test case "material_property_device"; testing time: 197636us
15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(18): Entering test case "ratios_device"
14: Running 4 test cases...
14: Entering test module "MaterialProperty"
14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(13): Entering test case "material_property_host"
14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(13): Leaving test case "material_property_host"; testing time: 105163us
14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(18): Entering test case "ratios_host"
15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(18): Leaving test case "ratios_device"; testing time: 145139us
15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(20): Entering test case "material_property_table_device"
1: Starting the main time stepping loop...
14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(18): Leaving test case "ratios_host"; testing time: 141657us
14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(20): Entering test case "material_property_table_host"
15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(20): Leaving test case "material_property_table_device"; testing time: 123608us
15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(25): Entering test case "material_property_polynomials_device"
14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(20): Leaving test case "material_property_table_host"; testing time: 98217us
14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(25): Entering test case "material_property_polynomials_host"
15: 
15: *** No errors detected
15: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property_device.cc(25): Leaving test case "material_property_polynomials_device"; testing time: 97941us
15: Leaving test module "MaterialPropertyDevice"; testing time: 564462us
14: /var/jenkins/workspace/adamantine-nightly/tests/test_material_property.cc(25): Leaving test case "material_property_polynomials_host"; testing time: 124332us
14: Leaving test module "MaterialProperty"; testing time: 469531us
14: 
14: *** No errors detected
15: 
 8/50 Test #15: test_material_property_device_1 ..........   Passed    3.36 sec
test 16
      Start 16: test_mechanical_operator_1

16: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_mechanical_operator"
16: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
16: Test timeout computed to be: 7200
14: 
 9/50 Test #14: test_material_property_1 .................   Passed    3.48 sec
test 17
      Start 17: test_mechanical_physics_1

17: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_mechanical_physics"
17: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
17: Test timeout computed to be: 7200
1: 10% completed
1: 20% completed
1: 30% completed
17: Running 9 test cases...
17: Entering test module "MechanicalPhysics"
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(198): Entering test case "elastostatic"
1: 40% completed
16: Running 3 test cases...
16: Entering test module "MechanicalOperator"
16: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_operator.cc(72): Entering test case "elastostatic"
1: 50% completed
1: Performing data assimilation at time 0.12...
1: Rank: 0 | Old parameters for member 0: 
1: Rank: 0 | Old parameters for member 1: 
1: Rank: 0 | Old parameters for member 2: 
1: Rank: 0 | Number expt sites mapped to DOFs: 1
1: Getting the perturbed innovation...
1: Applying the Kalman gain...
1: Updating the ensemble members...
1: Done.
1: 60% completed
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(198): Leaving test case "elastostatic"; testing time: 3063364us
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(276): Entering test case "elastoplastic_residual"
1: 70% completed
1: 80% completed
1: 90% completed
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(276): Leaving test case "elastoplastic_residual"; testing time: 2408795us
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(397): Entering test case "fe_nothing"
1: 100% completed
1: 
1: *** No errors detected
1: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 25588887us
1: Leaving test module "Integration_Data_Assimilation"; testing time: 303374828us
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(397): Leaving test case "fe_nothing"; testing time: 2762227us
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(664): Entering test case "thermoelastic_eshelby"
1: 
10/50 Test  #1: test_integration_da_1 ....................   Passed  308.27 sec
test 18
      Start 18: test_post_processor_1

18: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_post_processor"
18: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
18: Test timeout computed to be: 7200
18: Running 2 test cases...
18: Entering test module "PostProcessor"
18: /var/jenkins/workspace/adamantine-nightly/tests/test_post_processor.cc(27): Entering test case "thermal_post_processor"
18: /var/jenkins/workspace/adamantine-nightly/tests/test_post_processor.cc(27): Leaving test case "thermal_post_processor"; testing time: 1283669us
18: /var/jenkins/workspace/adamantine-nightly/tests/test_post_processor.cc(149): Entering test case "mechanical_post_processor"
18: 
18: *** No errors detected
18: /var/jenkins/workspace/adamantine-nightly/tests/test_post_processor.cc(149): Leaving test case "mechanical_post_processor"; testing time: 18076155us
18: Leaving test module "PostProcessor"; testing time: 19359888us
18: 
11/50 Test #18: test_post_processor_1 ....................   Passed   22.86 sec
test 19
      Start 19: test_quaternion_1

19: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_quaternion"
19: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
19: Test timeout computed to be: 7200
19: Running 1 test case...
19: Entering test module "Quaternion"
19: /var/jenkins/workspace/adamantine-nightly/tests/test_quaternion.cc(11): Entering test case "rotation"
19: /var/jenkins/workspace/adamantine-nightly/tests/test_quaternion.cc(11): Leaving test case "rotation"; testing time: 153us
19: Leaving test module "Quaternion"; testing time: 174us
19: 
19: *** No errors detected
19: 
12/50 Test #19: test_quaternion_1 ........................   Passed    4.07 sec
test 20
      Start 20: test_scan_path_1

20: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_scan_path"
20: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
20: Test timeout computed to be: 7200
20: Running 3 test cases...
20: Entering test module "ScanPath"
20: /var/jenkins/workspace/adamantine-nightly/tests/test_scan_path.cc(36): Entering test case "scan_path"
20: /var/jenkins/workspace/adamantine-nightly/tests/test_scan_path.cc(36): Leaving test case "scan_path"; testing time: 39929us
20: /var/jenkins/workspace/adamantine-nightly/tests/test_scan_path.cc(78): Entering test case "scan_path_location"
20: /var/jenkins/workspace/adamantine-nightly/tests/test_scan_path.cc(78): Leaving test case "scan_path_location"; testing time: 184us
20: /var/jenkins/workspace/adamantine-nightly/tests/test_scan_path.cc(106): Entering test case "five_axis"
20: /var/jenkins/workspace/adamantine-nightly/tests/test_scan_path.cc(106): Leaving test case "five_axis"; testing time: 37379us
20: Leaving test module "ScanPath"; testing time: 78327us
20: 
20: *** No errors detected
20: 
13/50 Test #20: test_scan_path_1 .........................   Passed    6.30 sec
test 21
      Start 21: test_thermal_operator_1

21: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_thermal_operator"
21: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
21: Test timeout computed to be: 7200
21: Running 6 test cases...
21: Entering test module "ThermalOperator"
21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(41): Entering test case "thermal_operator"
21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(41): Leaving test case "thermal_operator"; testing time: 658924us
21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(148): Entering test case "spmv"
21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(148): Leaving test case "spmv"; testing time: 994977us
21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(265): Entering test case "spmv_anisotropic"
21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(265): Leaving test case "spmv_anisotropic"; testing time: 959439us
21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(415): Entering test case "spmv_anisotropic_angle"
21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(415): Leaving test case "spmv_anisotropic_angle"; testing time: 3165128us
21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(580): Entering test case "spmv_rad"
16: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_operator.cc(72): Leaving test case "elastostatic"; testing time: 51572775us
16: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_operator.cc(302): Entering test case "thermoelastic"
21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(580): Leaving test case "spmv_rad"; testing time: 10706495us
21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(772): Entering test case "spmv_conv"
16: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_operator.cc(302): Leaving test case "thermoelastic"; testing time: 13176076us
16: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_operator.cc(393): Entering test case "jacobian"
16: 
16: *** No errors detected
16: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_operator.cc(393): Leaving test case "jacobian"; testing time: 693300us
16: Leaving test module "MechanicalOperator"; testing time: 65443085us
16: 
14/50 Test #16: test_mechanical_operator_1 ...............   Passed   68.40 sec
test 22
      Start 22: test_thermal_operator_device_1

22: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_thermal_operator_device"
22: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
22: Test timeout computed to be: 7200
22: Running 4 test cases...
22: Entering test module "ThermalOperatorDevice"
22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(31): Entering test case "thermal_operator_dev"
22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(31): Leaving test case "thermal_operator_dev"; testing time: 469968us
22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(124): Entering test case "spmv"
22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(124): Leaving test case "spmv"; testing time: 402853us
22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(237): Entering test case "mf_spmv"
21: 
21: *** No errors detected
21: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator.cc(772): Leaving test case "spmv_conv"; testing time: 9206112us
21: Leaving test module "ThermalOperator"; testing time: 25693036us
21: 
15/50 Test #21: test_thermal_operator_1 ..................   Passed   29.04 sec
test 23
      Start 23: test_thermal_physics_device_1

23: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_thermal_physics_device"
23: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
23: Test timeout computed to be: 7200
22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(237): Leaving test case "mf_spmv"; testing time: 3506377us
22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(375): Entering test case "spmv_anisotropic_angle"
23: Running 4 test cases...
23: Entering test module "ThermalPhysicsDevice"
23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(13): Entering test case "thermal_2d_explicit_device"
23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(13): Leaving test case "thermal_2d_explicit_device"; testing time: 820424us
23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(26): Entering test case "thermal_2d_manufactured_solution_device"
22: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_operator_device.cc(375): Leaving test case "spmv_anisotropic_angle"; testing time: 1346668us
22: Leaving test module "ThermalOperatorDevice"; testing time: 5727158us
22: 
22: *** No errors detected
22: 
16/50 Test #22: test_thermal_operator_device_1 ...........   Passed    9.27 sec
test 24
      Start 24: test_timer_1

24: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_timer"
24: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
24: Test timeout computed to be: 7200
23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(26): Leaving test case "thermal_2d_manufactured_solution_device"; testing time: 502499us
23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(31): Entering test case "initial_temperature_device"
23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(31): Leaving test case "initial_temperature_device"; testing time: 223567us
23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(36): Entering test case "energy_conservation_device"
24: Running 1 test case...
24: Entering test module "Timer"
24: /var/jenkins/workspace/adamantine-nightly/tests/test_timer.cc(15): Entering test case "test_timer"
24: 
24: *** No errors detected
24: /var/jenkins/workspace/adamantine-nightly/tests/test_timer.cc(15): Leaving test case "test_timer"; testing time: 612170us
24: Leaving test module "Timer"; testing time: 612231us
24: 
17/50 Test #24: test_timer_1 .............................   Passed    4.79 sec
test 25
      Start 25: test_utils_1

25: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_utils"
25: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
25: Test timeout computed to be: 7200
25: Running 1 test case...
25: Entering test module "utils"
25: /var/jenkins/workspace/adamantine-nightly/tests/test_utils.cc(11): Entering test case "utils"
25: /var/jenkins/workspace/adamantine-nightly/tests/test_utils.cc(11): Leaving test case "utils"; testing time: 38003us
25: Leaving test module "utils"; testing time: 38053us
25: 
25: *** No errors detected
25: 
18/50 Test #25: test_utils_1 .............................   Passed    3.44 sec
test 26
      Start 26: test_validate_input_database_1

26: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_validate_input_database"
26: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
26: Test timeout computed to be: 7200
26: Running 3 test cases...
26: Entering test module "validate_input_database"
26: /var/jenkins/workspace/adamantine-nightly/tests/test_validate_input_database.cc(14): Entering test case "expected_passes"
26: Test case expected_passes did not check any assertions
26: /var/jenkins/workspace/adamantine-nightly/tests/test_validate_input_database.cc(14): Leaving test case "expected_passes"; testing time: 1033us
26: /var/jenkins/workspace/adamantine-nightly/tests/test_validate_input_database.cc(55): Entering test case "parse_test_input_files"
26: Test case parse_test_input_files did not check any assertions
26: /var/jenkins/workspace/adamantine-nightly/tests/test_validate_input_database.cc(55): Leaving test case "parse_test_input_files"; testing time: 77423us
26: /var/jenkins/workspace/adamantine-nightly/tests/test_validate_input_database.cc(76): Entering test case "expected_failures"
26: /var/jenkins/workspace/adamantine-nightly/tests/test_validate_input_database.cc(76): Leaving test case "expected_failures"; testing time: 50363us
26: Leaving test module "validate_input_database"; testing time: 128966us
26: 
26: *** No errors detected
26: 
19/50 Test #26: test_validate_input_database_1 ...........   Passed    5.64 sec
test 27
      Start 27: test_connected_components_1

27: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_connected_components"
27: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
27: Test timeout computed to be: 7200
27: Running 4 test cases...
27: Entering test module "Master Test Suite"
27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(44): Entering test case "connected_components"
13: 20% completed
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(664): Leaving test case "thermoelastic_eshelby"; testing time: 227753097us
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(692): Entering test case "elastoplastic_radial_return"
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(692): Leaving test case "elastoplastic_radial_return"; testing time: 1481806us
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(873): Entering test case "cell_data_transfer_refine_coarsen"
23: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics_device.cc(36): Leaving test case "energy_conservation_device"; testing time: 163891530us
23: Leaving test module "ThermalPhysicsDevice"; testing time: 165438229us
23: 
23: *** No errors detected
23: 
20/50 Test #23: test_thermal_physics_device_1 ............   Passed  169.24 sec
test 29
      Start 29: test_integration_2d_1

29: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_2d"
29: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
29: Test timeout computed to be: 7200
29: Running 3 test cases...
29: Entering test module "Integration_2D"
29: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(19): Entering test case "integration_2D"
29: 10% completed
29: 20% completed
29: 30% completed
29: 40% completed
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(873): Leaving test case "cell_data_transfer_refine_coarsen"; testing time: 10531696us
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(991): Entering test case "activation_strain_for_newly_active_cells"
29: 50% completed
29: 60% completed
29: 70% completed
29: 80% completed
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(991): Leaving test case "activation_strain_for_newly_active_cells"; testing time: 1925193us
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(1133): Entering test case "thermoelastic_stress_uniform_heating"
29: 90% completed
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(1133): Leaving test case "thermoelastic_stress_uniform_heating"; testing time: 1220591us
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(1241): Entering test case "thermoelastoplastic_radial_return"
29: 100% completed
29: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(19): Leaving test case "integration_2D"; testing time: 9054878us
29: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(46): Entering test case "integration_2D_ensemble"
17: 
17: *** No errors detected
17: /var/jenkins/workspace/adamantine-nightly/tests/test_mechanical_physics.cc(1241): Leaving test case "thermoelastoplastic_radial_return"; testing time: 2574471us
17: Leaving test module "MechanicalPhysics"; testing time: 253722788us
17: 
21/50 Test #17: test_mechanical_physics_1 ................   Passed  256.51 sec
test 31
      Start 31: test_integration_2d_device_1

31: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_2d_device"
31: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
31: Test timeout computed to be: 7200
29: Starting the main time stepping loop...
31: Running 1 test case...
31: Entering test module "Integration_2D_Device"
31: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d_device.cc(19): Entering test case "intregation_2D_device"
31: 10% completed
29: 10% completed
31: 20% completed
31: 30% completed
29: 20% completed
31: 40% completed
29: 30% completed
31: 50% completed
29: 40% completed
31: 60% completed
31: 70% completed
31: 80% completed
31: 90% completed
31: 100% completed
31: 
31: *** No errors detected
31: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d_device.cc(19): Leaving test case "intregation_2D_device"; testing time: 13155679us
31: Leaving test module "Integration_2D_Device"; testing time: 13156035us
29: 50% completed
31: 
22/50 Test #31: test_integration_2d_device_1 .............   Passed   15.95 sec
test 33
      Start 33: test_integration_3d_1

33: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_3d"
33: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
33: Test timeout computed to be: 7200
29: 60% completed
29: 70% completed
29: 80% completed
33: Running 5 test cases...
33: Entering test module "Integration_3D"
33: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(102): Entering test case "integration_3D"
29: 90% completed
29: 100% completed
29: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(46): Leaving test case "integration_2D_ensemble"; testing time: 29206300us
29: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(78): Entering test case "integration_2D_units"
29: 10% completed
29: 20% completed
29: 30% completed
13: 30% completed
29: 40% completed
29: 50% completed
29: 60% completed
29: 70% completed
29: 80% completed
29: 90% completed
29: 100% completed
29: 
29: *** No errors detected
29: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(78): Leaving test case "integration_2D_units"; testing time: 10676586us
29: Leaving test module "Integration_2D"; testing time: 48938750us
29: 
23/50 Test #29: test_integration_2d_1 ....................   Passed   52.73 sec
test 35
      Start 35: test_integration_3d_amr_1

35: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_3d_amr"
35: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
35: Test timeout computed to be: 7200
35: Running 2 test cases...
35: Entering test module "Integration_3D_AMR"
35: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(19): Entering test case "integration_3D_amr"
35: 10% completed
35: 20% completed
35: 30% completed
35: 40% completed
35: 50% completed
35: 60% completed
35: 70% completed
35: 80% completed
35: 90% completed
35: 100% completed
35: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(19): Leaving test case "integration_3D_amr"; testing time: 42503920us
35: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(60): Entering test case "integration_3D_amr_refine_coarsen"
33: 10% completed
35: 10% completed
13: 40% completed
33: 20% completed
35: 20% completed
33: 30% completed
33: 40% completed
35: 30% completed
35: 40% completed
33: 50% completed
33: 60% completed
33: 70% completed
13: 50% completed
35: 50% completed
33: 80% completed
35: 60% completed
35: 70% completed
33: 90% completed
35: 80% completed
35: 90% completed
33: 100% completed
33: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(102): Leaving test case "integration_3D"; testing time: 519741525us
33: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(107): Entering test case "integration_3D_short"
35: 100% completed
35: 
35: *** No errors detected
35: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(60): Leaving test case "integration_3D_amr_refine_coarsen"; testing time: 465455203us
35: Leaving test module "Integration_3D_AMR"; testing time: 507960004us
35: 
24/50 Test #35: test_integration_3d_amr_1 ................   Passed  515.35 sec
test 37
      Start 37: test_integration_3d_amr_device_1

37: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_3d_amr_device"
37: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
37: Test timeout computed to be: 7200
37: Running 1 test case...
37: Entering test module "Integration_3D_AMR"
37: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr_device.cc(19): Entering test case "integration_3D_amr_device"
13: 60% completed
37: 10% completed
37: 20% completed
37: 30% completed
37: 40% completed
13: 70% completed
37: 50% completed
37: 60% completed
37: 70% completed
37: 80% completed
37: 90% completed
13: 80% completed
37: 100% completed
37: 
37: *** No errors detected
37: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr_device.cc(19): Leaving test case "integration_3D_amr_device"; testing time: 462867172us
37: Leaving test module "Integration_3D_AMR"; testing time: 462868006us
37: 
25/50 Test #37: test_integration_3d_amr_device_1 .........   Passed  466.98 sec
test 39
      Start 39: test_integration_da_augmented_1

39: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_da_augmented"
39: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
39: Test timeout computed to be: 7200
39: Running 1 test case...
39: Entering test module "Integration_Data_Assimilation_Augmented"
39: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da_augmented.cc(19): Entering test case "integration_3D_data_assimilation_augmented"
39: Reading the experimental log file...
39: Done. Log entries found for 1 camera(s), with 2 frame(s).
39: Starting the main time stepping loop...
39: 10% completed
39: 20% completed
39: 30% completed
39: 40% completed
39: 50% completed
39: 60% completed
13: 90% completed
39: 70% completed
39: Performing data assimilation at time 0.04...
39: Rank: 0 | Old parameters for member 0: 0.413453 
39: Rank: 0 | Old parameters for member 1: 0.385362 
39: Rank: 0 | Old parameters for member 2: 0.446065 
39: Rank: 0 | Number expt sites mapped to DOFs: 2
39: Getting the perturbed innovation...
39: Applying the Kalman gain...
39: Updating the ensemble members...
39: Done.
39: Rank: 0 | New parameters for member 0: 0.121104 
39: Rank: 0 | New parameters for member 1: 0.142225 
39: Rank: 0 | New parameters for member 2: 0.107206 
39: 80% completed
39: 90% completed
39: 100% completed
39: 
39: *** No errors detected
39: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da_augmented.cc(19): Leaving test case "integration_3D_data_assimilation_augmented"; testing time: 224070529us
39: Leaving test module "Integration_Data_Assimilation_Augmented"; testing time: 224071562us
39: 
26/50 Test #39: test_integration_da_augmented_1 ..........   Passed  227.73 sec
test 41
      Start 41: test_integration_thermoelastic_1

41: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic"
41: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
41: Test timeout computed to be: 7200
41: Running 2 test cases...
41: Entering test module "Integration_Thermoelastic"
41: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_thermoelastic.cc(19): Entering test case "integration_thermoelastic"
13: 100% completed
13: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_device.cc(19): Leaving test case "integration_3D_device"; testing time: 1722252823us
13: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_device.cc(46): Entering test case "integration_3D_checkpoint_restart_device"
13: 10% completed
13: 20% completed
13: 30% completed
13: 40% completed
13: 50% completed
13: 60% completed
13: 70% completed
13: Checkpoint reached
13: 80% completed
13: 90% completed
13: 100% completed
33: 10% completed
13: Restarting from file
13: 80% completed
13: 90% completed
13: 100% completed
13: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_device.cc(46): Leaving test case "integration_3D_checkpoint_restart_device"; testing time: 557920825us
13: Leaving test module "Integration_3D_Device"; testing time: 2280174010us
13: 
13: *** No errors detected
13: 
27/50 Test #13: test_integration_3d_device_1 .............   Passed  2284.07 sec
test 43
      Start 43: test_material_deposition_1

43: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_material_deposition"
43: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
43: Test timeout computed to be: 7200
43: Running 11 test cases...
43: Entering test module "MaterialDeposition"
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(50): Entering test case "read_material_deposition_file_2d"
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(50): Leaving test case "read_material_deposition_file_2d"; testing time: 30133us
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(92): Entering test case "read_material_deposition_file_3d"
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(92): Leaving test case "read_material_deposition_file_3d"; testing time: 40681us
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(134): Entering test case "get_elements_to_activate_2d"
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(134): Leaving test case "get_elements_to_activate_2d"; testing time: 229815us
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(195): Entering test case "get_elements_to_activate_3d"
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(195): Leaving test case "get_elements_to_activate_3d"; testing time: 765524us
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(262): Entering test case "material_deposition"
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(262): Leaving test case "material_deposition"; testing time: 44494839us
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(395): Entering test case "deposition_from_scan_path_2d"
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(395): Leaving test case "deposition_from_scan_path_2d"; testing time: 11374us
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(445): Entering test case "deposition_from_scan_path_3d"
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(445): Leaving test case "deposition_from_scan_path_3d"; testing time: 264us
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(499): Entering test case "deposition_from_L_scan_path_3d"
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(499): Leaving test case "deposition_from_L_scan_path_3d"; testing time: 38325us
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(586): Entering test case "deposition_from_diagonal_scan_path_3d"
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(586): Leaving test case "deposition_from_diagonal_scan_path_3d"; testing time: 33837us
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(640): Entering test case "merge_multiple_deposition_paths"
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(640): Leaving test case "merge_multiple_deposition_paths"; testing time: 147us
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(697): Entering test case "deposition_quaternion_straight_line"
43: 
43: *** No errors detected
43: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(697): Leaving test case "deposition_quaternion_straight_line"; testing time: 39713us
43: Leaving test module "MaterialDeposition"; testing time: 45686805us
43: 
28/50 Test #43: test_material_deposition_1 ...............   Passed   48.91 sec
test 45
      Start 45: test_microstructure_1

45: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_microstructure"
45: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
45: Test timeout computed to be: 7200
45: Running 1 test case...
45: Entering test module "MicroStructure"
45: /var/jenkins/workspace/adamantine-nightly/tests/test_microstructure.cc(53): Entering test case "G_and_R"
45: 
45: *** No errors detected
45: /var/jenkins/workspace/adamantine-nightly/tests/test_microstructure.cc(53): Leaving test case "G_and_R"; testing time: 964318us
45: Leaving test module "MicroStructure"; testing time: 964360us
45: 
29/50 Test #45: test_microstructure_1 ....................   Passed    4.24 sec
test 47
      Start 47: test_thermal_physics_1

47: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_thermal_physics"
47: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
47: Test timeout computed to be: 7200
47: Running 7 test cases...
47: Entering test module "ThermalPhysics"
47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(15): Entering test case "thermal_2d_explicit_host"
47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(15): Leaving test case "thermal_2d_explicit_host"; testing time: 4354747us
47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(28): Entering test case "thermal_2d_manufactured_solution_host"
47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(28): Leaving test case "thermal_2d_manufactured_solution_host"; testing time: 4197687us
47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(33): Entering test case "initial_temperature_host"
47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(33): Leaving test case "initial_temperature_host"; testing time: 4000670us
47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(38): Entering test case "energy_conservation_host"
47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(38): Leaving test case "energy_conservation_host"; testing time: 25768454us
47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(43): Entering test case "radiation_bcs_host"
47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(43): Leaving test case "radiation_bcs_host"; testing time: 8823755us
47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(48): Entering test case "convection_bcs_host"
33: 20% completed
47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(48): Leaving test case "convection_bcs_host"; testing time: 238461435us
47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(53): Entering test case "reference_temperature_host"
47: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(53): Leaving test case "reference_temperature_host"; testing time: 665549us
47: Leaving test module "ThermalPhysics"; testing time: 286272965us
47: 
47: *** No errors detected
47: 
30/50 Test #47: test_thermal_physics_1 ...................   Passed  298.93 sec
test 49
      Start 49: test_ensemble_management_1

49: Test command: /usr/bin/mpiexec "-n" "1" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_ensemble_management"
49: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
49: Test timeout computed to be: 7200
49: Running 1 test case...
49: Entering test module "EnsembleManagement"
49: /var/jenkins/workspace/adamantine-nightly/tests/test_ensemble_management.cc(17): Entering test case "database_ensemble"
49: 
49: *** No errors detected
49: /var/jenkins/workspace/adamantine-nightly/tests/test_ensemble_management.cc(17): Leaving test case "database_ensemble"; testing time: 215970us
49: Leaving test module "EnsembleManagement"; testing time: 216014us
49: 
31/50 Test #49: test_ensemble_management_1 ...............   Passed    7.27 sec
33: 30% completed
33: 40% completed
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33: 60% completed
27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(44): Leaving test case "connected_components"; testing time: 3842385198us
27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(144): Entering test case "disconnected_components"
27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(144): Leaving test case "disconnected_components"; testing time: 209947us
27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(238): Entering test case "adaptive_mesh_refinement"
27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(238): Leaving test case "adaptive_mesh_refinement"; testing time: 1961833us
27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(341): Entering test case "vertex_contacts"
27: 
27: *** No errors detected
27: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(341): Leaving test case "vertex_contacts"; testing time: 247482us
27: Leaving test module "Master Test Suite"; testing time: 3844804622us
27: 
32/50 Test #27: test_connected_components_1 ..............   Passed  3848.46 sec
test 28
      Start 28: test_connected_components_2

28: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_connected_components"
28: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
28: Test timeout computed to be: 7200
28: Running 4 test cases...
28: Entering test module "Master Test Suite"
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(44): Entering test case "connected_components"
28: Running 4 test cases...
28: Entering test module "Master Test Suite"
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(44): Entering test case "connected_components"
33: 70% completed
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33: 100% completed
33: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(107): Leaving test case "integration_3D_short"; testing time: 3930792637us
33: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(112): Entering test case "integration_3D_five_axis"
41: 20% completed
33: 10% completed
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(44): Leaving test case "connected_components"; testing time: 3000257034us
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(144): Entering test case "disconnected_components"
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(44): Leaving test case "connected_components"; testing time: 2999985541us
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(144): Entering test case "disconnected_components"
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(144): Leaving test case "disconnected_components"; testing time: 282603us
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(238): Entering test case "adaptive_mesh_refinement"
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(144): Leaving test case "disconnected_components"; testing time: 198176us
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(238): Entering test case "adaptive_mesh_refinement"
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(238): Leaving test case "adaptive_mesh_refinement"; testing time: 1297744us
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(341): Entering test case "vertex_contacts"
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(238): Leaving test case "adaptive_mesh_refinement"; testing time: 1328686us
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(341): Entering test case "vertex_contacts"
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(341): Leaving test case "vertex_contacts"; testing time: 264984us
28: Leaving test module "Master Test Suite"; testing time: 3002102506us
28: 
28: *** No errors detected
28: /var/jenkins/workspace/adamantine-nightly/tests/test_connected_components.cc(341): Leaving test case "vertex_contacts"; testing time: 233983us
28: Leaving test module "Master Test Suite"; testing time: 3001746617us
28: 
28: *** No errors detected
28: 
33/50 Test #28: test_connected_components_2 ..............   Passed  3006.17 sec
test 30
      Start 30: test_integration_2d_2

30: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_2d"
30: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
30: Test timeout computed to be: 7200
30: Running 3 test cases...
30: Entering test module "Integration_2D"
30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(19): Entering test case "integration_2D"
30: Running 3 test cases...
30: Entering test module "Integration_2D"
30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(19): Entering test case "integration_2D"
30: 10% completed
30: 20% completed
30: 30% completed
30: 40% completed
30: 50% completed
30: 60% completed
30: 70% completed
30: 80% completed
30: 90% completed
30: 100% completed
30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(19): Leaving test case "integration_2D"; testing time: 6874210us
30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(46): Entering test case "integration_2D_ensemble"
30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(19): Leaving test case "integration_2D"; testing time: 6529479us
30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(46): Entering test case "integration_2D_ensemble"
30: Starting the main time stepping loop...
30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(46): Leaving test case "integration_2D_ensemble"; testing time: 3219512us
30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(78): Entering test case "integration_2D_units"
30: 10% completed
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30: 100% completed
30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(46): Leaving test case "integration_2D_ensemble"; testing time: 15509391us
30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(78): Entering test case "integration_2D_units"
30: 10% completed
30: 20% completed
30: 30% completed
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30: 50% completed
30: 60% completed
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30: 80% completed
30: 90% completed
30: 100% completed
30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(78): Leaving test case "integration_2D_units"; testing time: 19039176us
30: Leaving test module "Integration_2D"; testing time: 29133923us
30: 
30: *** No errors detected
30: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d.cc(78): Leaving test case "integration_2D_units"; testing time: 6749630us
30: Leaving test module "Integration_2D"; testing time: 28789540us
30: 
30: *** No errors detected
30: 
34/50 Test #30: test_integration_2d_2 ....................   Passed   32.96 sec
test 32
      Start 32: test_integration_2d_device_2

32: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_2d_device"
32: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
32: Test timeout computed to be: 7200
32: Running 1 test case...
32: Entering test module "Integration_2D_Device"
32: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d_device.cc(19): Entering test case "intregation_2D_device"
32: Running 1 test case...
32: Entering test module "Integration_2D_Device"
32: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d_device.cc(19): Entering test case "intregation_2D_device"
32: 10% completed
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32: 30% completed
32: 40% completed
32: 50% completed
32: 60% completed
32: 70% completed
32: 80% completed
32: 90% completed
32: 100% completed
32: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d_device.cc(19): Leaving test case "intregation_2D_device"; testing time: 8314459us
32: Leaving test module "Integration_2D_Device"; testing time: 8315014us
32: 
32: *** No errors detected
32: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_2d_device.cc(19): Leaving test case "intregation_2D_device"; testing time: 7968238us
32: Leaving test module "Integration_2D_Device"; testing time: 7968591us
32: 
32: *** No errors detected
32: 
35/50 Test #32: test_integration_2d_device_2 .............   Passed   12.64 sec
test 34
      Start 34: test_integration_3d_2

34: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_3d"
34: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
34: Test timeout computed to be: 7200
34: Running 5 test cases...
34: Entering test module "Integration_3D"
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(102): Entering test case "integration_3D"
34: Running 5 test cases...
34: Entering test module "Integration_3D"
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(102): Entering test case "integration_3D"
34: 10% completed
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34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(102): Leaving test case "integration_3D"; testing time: 201242523us
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(107): Entering test case "integration_3D_short"
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(102): Leaving test case "integration_3D"; testing time: 200719311us
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(107): Entering test case "integration_3D_short"
36/50 Test #33: test_integration_3d_1 ....................***Timeout 7200.11 sec
34: 10% completed
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34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(107): Leaving test case "integration_3D_short"; testing time: 1351471694us
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(112): Entering test case "integration_3D_five_axis"
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(107): Leaving test case "integration_3D_short"; testing time: 1351605420us
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(112): Entering test case "integration_3D_five_axis"
37/50 Test #41: test_integration_thermoelastic_1 .........***Timeout 7200.10 sec
test 36
      Start 36: test_integration_3d_amr_2

36: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_3d_amr"
36: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
36: Test timeout computed to be: 7200
36: Running 2 test cases...
36: Entering test module "Integration_3D_AMR"
36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(19): Entering test case "integration_3D_amr"
36: Running 2 test cases...
36: Entering test module "Integration_3D_AMR"
36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(19): Entering test case "integration_3D_amr"
36: 10% completed
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36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(19): Leaving test case "integration_3D_amr"; testing time: 14899424us
36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(60): Entering test case "integration_3D_amr_refine_coarsen"
36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(19): Leaving test case "integration_3D_amr"; testing time: 14961077us
36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(60): Entering test case "integration_3D_amr_refine_coarsen"
36: 10% completed
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36: 30% completed
36: 40% completed
36: 50% completed
36: 60% completed
36: 70% completed
36: 80% completed
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36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(60): Leaving test case "integration_3D_amr_refine_coarsen"; testing time: 140983668us
36: Leaving test module "Integration_3D_AMR"; testing time: 155884098us
36: 
36: *** No errors detected
36: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr.cc(60): Leaving test case "integration_3D_amr_refine_coarsen"; testing time: 140983663us
36: Leaving test module "Integration_3D_AMR"; testing time: 155945946us
36: 
36: *** No errors detected
36: 
38/50 Test #36: test_integration_3d_amr_2 ................   Passed  164.17 sec
test 38
      Start 38: test_integration_3d_amr_device_2

38: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_3d_amr_device"
38: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
38: Test timeout computed to be: 7200
38: Running 1 test case...
38: Entering test module "Integration_3D_AMR"
38: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr_device.cc(19): Entering test case "integration_3D_amr_device"
38: Running 1 test case...
38: Entering test module "Integration_3D_AMR"
38: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr_device.cc(19): Entering test case "integration_3D_amr_device"
38: 10% completed
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38: 60% completed
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38: 80% completed
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38: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr_device.cc(19): Leaving test case "integration_3D_amr_device"; testing time: 124150506us
38: Leaving test module "Integration_3D_AMR"; testing time: 124151247us
38: 
38: *** No errors detected
38: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d_amr_device.cc(19): Leaving test case "integration_3D_amr_device"; testing time: 124086953us
38: Leaving test module "Integration_3D_AMR"; testing time: 124087902us
38: 
38: *** No errors detected
38: 
39/50 Test #38: test_integration_3d_amr_device_2 .........   Passed  131.82 sec
test 40
      Start 40: test_integration_da_augmented_2

40: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_da_augmented"
40: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
40: Test timeout computed to be: 7200
40: Running 1 test case...
40: Entering test module "Integration_Data_Assimilation_Augmented"
40: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da_augmented.cc(19): Entering test case "integration_3D_data_assimilation_augmented"
40: Running 1 test case...
40: Entering test module "Integration_Data_Assimilation_Augmented"
40: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da_augmented.cc(19): Entering test case "integration_3D_data_assimilation_augmented"
40: Reading the experimental log file...
40: Done. Log entries found for 1 camera(s), with 2 frame(s).
40: Starting the main time stepping loop...
40: 10% completed
40: 20% completed
40: 30% completed
40: Rank: 1 | Old parameters for member 2: 0.446065 
40: Rank: 1 | Number expt sites mapped to DOFs: 2
40: 40% completed
40: 50% completed
40: 60% completed
40: 70% completed
40: Performing data assimilation at time 0.04...
40: Rank: 0 | Old parameters for member 0: 0.413453 
40: Rank: 0 | Old parameters for member 1: 0.385362 
40: Rank: 0 | Number expt sites mapped to DOFs: 2
40: Getting the perturbed innovation...
40: Applying the Kalman gain...
40: Updating the ensemble members...
40: Rank: 1 | New parameters for member 2: 0.107206 
40: Done.
40: Rank: 0 | New parameters for member 0: 0.121104 
40: Rank: 0 | New parameters for member 1: 0.142225 
40: 80% completed
40: 90% completed
40: 100% completed
40: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da_augmented.cc(19): Leaving test case "integration_3D_data_assimilation_augmented"; testing time: 76738344us
40: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da_augmented.cc(19): Leaving test case "integration_3D_data_assimilation_augmented"; testing time: 76665829us
40: Leaving test module "Integration_Data_Assimilation_Augmented"; testing time: 76666239us
40: 
40: *** No errors detected
40: 
40: *** No errors detected
40: Leaving test module "Integration_Data_Assimilation_Augmented"; testing time: 76738712us
40: 
40/50 Test #40: test_integration_da_augmented_2 ..........   Passed   84.87 sec
test 42
      Start 42: test_integration_thermoelastic_2

42: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic"
42: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
42: Test timeout computed to be: 7200
42: Running 2 test cases...
42: Entering test module "Integration_Thermoelastic"
42: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_thermoelastic.cc(19): Entering test case "integration_thermoelastic"
42: Running 2 test cases...
42: Entering test module "Integration_Thermoelastic"
42: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_thermoelastic.cc(19): Entering test case "integration_thermoelastic"
42: 
42: --------------------------------------------------------
42: An error occurred in line <1581> of file </opt/dealii/include/deal.II/lac/la_parallel_vector.h> in function
42:     Number dealii::LinearAlgebra::distributed::Vector<Number, MemorySpace>::operator()(size_type) const [with Number = double; MemorySpace = dealii::MemorySpace::Host; size_type = long unsigned int]
42: The violated condition was: 
42:     partitioner->in_local_range(global_index) || vector_is_ghosted == true
42: Additional information: 
42:     You tried to read a ghost element of this vector, but it has not
42:     imported its ghost values.
42: 
42: Stacktrace:
42: -----------
42: #0  /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: dealii::LinearAlgebra::distributed::Vector<double, dealii::MemorySpace::Host>::operator()(unsigned long) const
42: #1  /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: dealii::LinearAlgebra::distributed::Vector<double, dealii::MemorySpace::Host>::operator[](unsigned long) const
42: #2  /opt/dealii/lib/libdeal_II.g.so.9.6.2: dealii::LinearAlgebra::distributed::Vector<double, dealii::MemorySpace::Host>::extract_subvector_to(dealii::ArrayView<unsigned long const, dealii::MemorySpace::Host> const&, dealii::ArrayView<double, dealii::MemorySpace::Host>&) const
42: #3  /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: void dealii::DoFCellAccessor<3, 3, false>::get_dof_values<double, double*>(dealii::ReadVector<double> const&, double*, double*) const
42: #4  /opt/dealii/lib/libdeal_II.g.so.9.6.2: void dealii::DoFCellAccessor<3, 3, false>::get_dof_values<dealii::ReadVector<double>, double>(dealii::ReadVector<double> const&, dealii::Vector<double>&) const
42: #5  /opt/dealii/lib/libdeal_II.g.so.9.6.2: void dealii::DoFCellAccessor<3, 3, false>::get_interpolated_dof_values<double>(dealii::ReadVector<double> const&, dealii::Vector<double>&, unsigned short) const
42: #6  /opt/dealii/lib/libdeal_II.g.so.9.6.2: void dealii::FEValuesBase<3, 3>::CellIteratorWrapper::get_interpolated_dof_values<double>(dealii::ReadVector<double> const&, dealii::Vector<double>&) const
42: #7  /opt/dealii/lib/libdeal_II.g.so.9.6.2: void dealii::FEValuesViews::Vector<3, 3>::get_function_symmetric_gradients<double>(dealii::ReadVector<double> const&, std::vector<dealii::ProductType<double, dealii::SymmetricTensor<2, 3, double> >::type, std::allocator<dealii::ProductType<double, dealii::SymmetricTensor<2, 3, double> >::type> >&) const
42: #8  /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: adamantine::MechanicalPhysics<3, -1, 3, adamantine::SolidLiquidPowder, dealii::MemorySpace::Host>::evaluate_trial_state(dealii::LinearAlgebra::distributed::Vector<double, dealii::MemorySpace::Host> const&)
42: #9  /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: adamantine::MechanicalPhysics<3, -1, 3, adamantine::SolidLiquidPowder, dealii::MemorySpace::Host>::evaluate_residual(dealii::LinearAlgebra::distributed::Vector<double, dealii::MemorySpace::Host> const&)
42: #10  /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: adamantine::MechanicalPhysics<3, -1, 3, adamantine::SolidLiquidPowder, dealii::MemorySpace::Host>::solve()
42: #11  /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: std::pair<dealii::LinearAlgebra::distributed::Vector<double, dealii::MemorySpace::Host>, dealii::LinearAlgebra::distributed::Vector<double, dealii::MemorySpace::Host> > run<3, -1, 3, adamantine::SolidLiquidPowder, dealii::MemorySpace::Host>(ompi_communicator_t* const&, boost::property_tree::basic_ptree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::vector<adamantine::Timer, std::allocator<adamantine::Timer> >&)
42: #12  /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: integration_thermoelastic::test_method()
42: #13  /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: 
42: #14  /var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_thermoelastic: boost::detail::function::void_function_invoker0<void (*)(), void>::invoke(boost::detail::function::function_buffer&)
42: #15  /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: 
42: #16  /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: boost::execution_monitor::catch_signals(boost::function<int ()> const&)
42: #17  /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: boost::execution_monitor::execute(boost::function<int ()> const&)
42: #18  /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: boost::execution_monitor::vexecute(boost::function<void ()> const&)
42: #19  /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: boost::unit_test::unit_test_monitor_t::execute_and_translate(boost::function<void ()> const&, unsigned long)
42: #20  /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: 
42: #21  /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: 
42: #22  /lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0: boost::unit_test::framework::run(unsigned long, bool)
42: --------------------------------------------------------
42: 
42: Calling MPI_Abort now.
42: To break execution in a GDB session, execute 'break MPI_Abort' before running. You can also put the following into your ~/.gdbinit:
42:   set breakpoint pending on
42:   break MPI_Abort
42:   set breakpoint pending auto
42: --------------------------------------------------------------------------
42: MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD
42: with errorcode 255.
42: 
42: NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
42: You may or may not see output from other processes, depending on
42: exactly when Open MPI kills them.
42: --------------------------------------------------------------------------
41/50 Test #42: test_integration_thermoelastic_2 .........***Failed   12.06 sec
test 44
      Start 44: test_material_deposition_2

44: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_material_deposition"
44: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
44: Test timeout computed to be: 7200
34: 10% completed
44: Running 11 test cases...
44: Entering test module "MaterialDeposition"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(50): Entering test case "read_material_deposition_file_2d"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(50): Leaving test case "read_material_deposition_file_2d"; testing time: 24952us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(92): Entering test case "read_material_deposition_file_3d"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(92): Leaving test case "read_material_deposition_file_3d"; testing time: 25424us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(134): Test case "get_elements_to_activate_2d" is skipped because precondition failed: the test only works in serial
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(195): Test case "get_elements_to_activate_3d" is skipped because precondition failed: the test only works in serial
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(262): Entering test case "material_deposition"
44: Running 11 test cases...
44: Entering test module "MaterialDeposition"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(50): Entering test case "read_material_deposition_file_2d"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(50): Leaving test case "read_material_deposition_file_2d"; testing time: 426us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(92): Entering test case "read_material_deposition_file_3d"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(92): Leaving test case "read_material_deposition_file_3d"; testing time: 223us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(134): Test case "get_elements_to_activate_2d" is skipped because precondition failed: the test only works in serial
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(195): Test case "get_elements_to_activate_3d" is skipped because precondition failed: the test only works in serial
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(262): Entering test case "material_deposition"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(262): Leaving test case "material_deposition"; testing time: 17033106us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(395): Entering test case "deposition_from_scan_path_2d"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(395): Leaving test case "deposition_from_scan_path_2d"; testing time: 13418us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(445): Entering test case "deposition_from_scan_path_3d"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(445): Leaving test case "deposition_from_scan_path_3d"; testing time: 222us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(499): Entering test case "deposition_from_L_scan_path_3d"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(262): Leaving test case "material_deposition"; testing time: 17085827us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(395): Entering test case "deposition_from_scan_path_2d"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(395): Leaving test case "deposition_from_scan_path_2d"; testing time: 343us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(445): Entering test case "deposition_from_scan_path_3d"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(445): Leaving test case "deposition_from_scan_path_3d"; testing time: 256us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(499): Entering test case "deposition_from_L_scan_path_3d"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(499): Leaving test case "deposition_from_L_scan_path_3d"; testing time: 257us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(586): Entering test case "deposition_from_diagonal_scan_path_3d"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(499): Leaving test case "deposition_from_L_scan_path_3d"; testing time: 22365us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(586): Entering test case "deposition_from_diagonal_scan_path_3d"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(586): Leaving test case "deposition_from_diagonal_scan_path_3d"; testing time: 12214us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(640): Entering test case "merge_multiple_deposition_paths"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(640): Leaving test case "merge_multiple_deposition_paths"; testing time: 139us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(697): Entering test case "deposition_quaternion_straight_line"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(586): Leaving test case "deposition_from_diagonal_scan_path_3d"; testing time: 11739us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(640): Entering test case "merge_multiple_deposition_paths"
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(640): Leaving test case "merge_multiple_deposition_paths"; testing time: 131us
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(697): Entering test case "deposition_quaternion_straight_line"
44: 
44: *** No errors detected
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(697): Leaving test case "deposition_quaternion_straight_line"; testing time: 11937us
44: Leaving test module "MaterialDeposition"; testing time: 17163377us
44: 
44: *** No errors detected
44: /var/jenkins/workspace/adamantine-nightly/tests/test_material_deposition.cc(697): Leaving test case "deposition_quaternion_straight_line"; testing time: 11893us
44: Leaving test module "MaterialDeposition"; testing time: 17095412us
44: 
42/50 Test #44: test_material_deposition_2 ...............   Passed   25.39 sec
test 46
      Start 46: test_microstructure_2

46: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_microstructure"
46: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
46: Test timeout computed to be: 7200
46: Running 1 test case...
46: Entering test module "MicroStructure"
46: /var/jenkins/workspace/adamantine-nightly/tests/test_microstructure.cc(53): Entering test case "G_and_R"
46: Running 1 test case...
46: Entering test module "MicroStructure"
46: /var/jenkins/workspace/adamantine-nightly/tests/test_microstructure.cc(53): Entering test case "G_and_R"
46: 
46: *** No errors detected
46: Test case G_and_R did not check any assertions
46: /var/jenkins/workspace/adamantine-nightly/tests/test_microstructure.cc(53): Leaving test case "G_and_R"; testing time: 532229us
46: Leaving test module "MicroStructure"; testing time: 532284us
46: 
46: *** No errors detected
46: /var/jenkins/workspace/adamantine-nightly/tests/test_microstructure.cc(53): Leaving test case "G_and_R"; testing time: 442614us
46: Leaving test module "MicroStructure"; testing time: 442666us
46: 
43/50 Test #46: test_microstructure_2 ....................   Passed    8.07 sec
test 48
      Start 48: test_thermal_physics_2

48: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_thermal_physics"
48: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
48: Test timeout computed to be: 7200
48: Running 7 test cases...
48: Entering test module "ThermalPhysics"
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(15): Entering test case "thermal_2d_explicit_host"
48: Running 7 test cases...
48: Entering test module "ThermalPhysics"
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(15): Entering test case "thermal_2d_explicit_host"
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(15): Leaving test case "thermal_2d_explicit_host"; testing time: 286731us
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(28): Entering test case "thermal_2d_manufactured_solution_host"
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(15): Leaving test case "thermal_2d_explicit_host"; testing time: 358133us
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(28): Entering test case "thermal_2d_manufactured_solution_host"
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(28): Leaving test case "thermal_2d_manufactured_solution_host"; testing time: 234862us
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(33): Entering test case "initial_temperature_host"
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(28): Leaving test case "thermal_2d_manufactured_solution_host"; testing time: 234663us
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(33): Entering test case "initial_temperature_host"
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(33): Leaving test case "initial_temperature_host"; testing time: 228356us
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(33): Leaving test case "initial_temperature_host"; testing time: 228466us
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(38): Entering test case "energy_conservation_host"
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(38): Entering test case "energy_conservation_host"
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(38): Leaving test case "energy_conservation_host"; testing time: 9454329us
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(43): Entering test case "radiation_bcs_host"
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(38): Leaving test case "energy_conservation_host"; testing time: 9454531us
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(43): Entering test case "radiation_bcs_host"
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(43): Leaving test case "radiation_bcs_host"; testing time: 5262302us
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(48): Entering test case "convection_bcs_host"
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(43): Leaving test case "radiation_bcs_host"; testing time: 5262266us
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(48): Entering test case "convection_bcs_host"
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(48): Leaving test case "convection_bcs_host"; testing time: 86330782us
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(53): Entering test case "reference_temperature_host"
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(48): Leaving test case "convection_bcs_host"; testing time: 86330889us
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(53): Entering test case "reference_temperature_host"
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(53): Leaving test case "reference_temperature_host"; testing time: 178984us
48: Leaving test module "ThermalPhysics"; testing time: 102049220us
48: 
48: *** No errors detected
48: 
48: *** No errors detected
48: /var/jenkins/workspace/adamantine-nightly/tests/test_thermal_physics.cc(53): Leaving test case "reference_temperature_host"; testing time: 235313us
48: Leaving test module "ThermalPhysics"; testing time: 102034126us
48: 
44/50 Test #48: test_thermal_physics_2 ...................   Passed  110.12 sec
test 50
      Start 50: test_ensemble_management_2

50: Test command: /usr/bin/mpiexec "-n" "2" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_ensemble_management"
50: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
50: Test timeout computed to be: 7200
50: Running 1 test case...
50: Entering test module "EnsembleManagement"
50: /var/jenkins/workspace/adamantine-nightly/tests/test_ensemble_management.cc(17): Entering test case "database_ensemble"
50: 
50: *** No errors detected
50: /var/jenkins/workspace/adamantine-nightly/tests/test_ensemble_management.cc(17): Leaving test case "database_ensemble"; testing time: 431us
50: Leaving test module "EnsembleManagement"; testing time: 455us
50: Running 1 test case...
50: Entering test module "EnsembleManagement"
50: /var/jenkins/workspace/adamantine-nightly/tests/test_ensemble_management.cc(17): Entering test case "database_ensemble"
50: 
50: *** No errors detected
50: /var/jenkins/workspace/adamantine-nightly/tests/test_ensemble_management.cc(17): Leaving test case "database_ensemble"; testing time: 77219us
50: Leaving test module "EnsembleManagement"; testing time: 77254us
50: 
45/50 Test #50: test_ensemble_management_2 ...............   Passed    6.65 sec
34: 20% completed
34: 30% completed
34: 40% completed
34: 50% completed
34: 60% completed
34: 70% completed
34: 80% completed
34: 90% completed
34: 100% completed
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(112): Leaving test case "integration_3D_five_axis"; testing time: 2696933883us
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(117): Entering test case "integration_3D_checkpoint_restart"
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(112): Leaving test case "integration_3D_five_axis"; testing time: 2696762104us
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(117): Entering test case "integration_3D_checkpoint_restart"
34: 10% completed
34: 20% completed
34: 30% completed
34: 40% completed
34: 50% completed
34: 60% completed
34: 70% completed
34: Checkpoint reached
34: 80% completed
34: 90% completed
34: 100% completed
34: Restarting from file
34: 80% completed
34: 90% completed
34: 100% completed
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(117): Leaving test case "integration_3D_checkpoint_restart"; testing time: 94516006us
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(169): Entering test case "hourglass"
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(117): Leaving test case "integration_3D_checkpoint_restart"; testing time: 94519566us
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(169): Entering test case "hourglass"
34: n_time_step: 1 time: 0 n_dofs (thermal) after mesh refinement: 1172
34: n_time_step: 100 time: 0.99 n_dofs (thermal) after cell activation: 1178
34: 10% completed
34: n_time_step: 101 time: 1 n_dofs (thermal) after cell activation: 1178
34: n_time_step: 124 time: 1.23 n_dofs (thermal) after cell activation: 1181
34: n_time_step: 147 time: 1.46 n_dofs (thermal) after cell activation: 1184
34: n_time_step: 170 time: 1.69 n_dofs (thermal) after cell activation: 1187
34: n_time_step: 171 time: 1.7 n_dofs (thermal) after cell activation: 1187
34: n_time_step: 194 time: 1.93 n_dofs (thermal) after cell activation: 1190
34: 20% completed
34: n_time_step: 217 time: 2.16 n_dofs (thermal) after cell activation: 1193
34: n_time_step: 241 time: 2.4 n_dofs (thermal) after cell activation: 1196
34: n_time_step: 264 time: 2.63 n_dofs (thermal) after cell activation: 1199
34: n_time_step: 287 time: 2.86 n_dofs (thermal) after cell activation: 1202
34: n_time_step: 301 time: 3 n_dofs (thermal) after cell activation: 1204
34: 30% completed
34: n_time_step: 325 time: 3.24 n_dofs (thermal) after cell activation: 1205
34: n_time_step: 348 time: 3.47 n_dofs (thermal) after cell activation: 1206
34: n_time_step: 371 time: 3.7 n_dofs (thermal) after cell activation: 1207
34: n_time_step: 395 time: 3.94 n_dofs (thermal) after cell activation: 1208
34: 40% completed
34: n_time_step: 418 time: 4.17 n_dofs (thermal) after cell activation: 1209
34: n_time_step: 441 time: 4.4 n_dofs (thermal) after cell activation: 1210
34: n_time_step: 465 time: 4.64 n_dofs (thermal) after cell activation: 1211
34: n_time_step: 488 time: 4.87 n_dofs (thermal) after cell activation: 1212
34: 50% completed
34: n_time_step: 507 time: 5.06 n_dofs (thermal) after cell activation: 1216
34: n_time_step: 531 time: 5.3 n_dofs (thermal) after cell activation: 1217
34: n_time_step: 554 time: 5.53 n_dofs (thermal) after cell activation: 1218
34: n_time_step: 577 time: 5.76 n_dofs (thermal) after cell activation: 1219
34: n_time_step: 601 time: 6 n_dofs (thermal) after cell activation: 1220
34: 60% completed
34: n_time_step: 624 time: 6.23 n_dofs (thermal) after cell activation: 1221
34: n_time_step: 647 time: 6.46 n_dofs (thermal) after cell activation: 1222
34: n_time_step: 671 time: 6.7 n_dofs (thermal) after cell activation: 1223
34: n_time_step: 694 time: 6.93 n_dofs (thermal) after cell activation: 1224
34: 70% completed
34: n_time_step: 717 time: 7.16 n_dofs (thermal) after cell activation: 1226
34: n_time_step: 740 time: 7.39 n_dofs (thermal) after cell activation: 1227
34: n_time_step: 763 time: 7.62 n_dofs (thermal) after cell activation: 1228
34: n_time_step: 787 time: 7.86 n_dofs (thermal) after cell activation: 1229
34: 80% completed
34: n_time_step: 810 time: 8.09 n_dofs (thermal) after cell activation: 1230
34: n_time_step: 833 time: 8.32 n_dofs (thermal) after cell activation: 1231
34: n_time_step: 857 time: 8.56 n_dofs (thermal) after cell activation: 1232
34: n_time_step: 880 time: 8.79 n_dofs (thermal) after cell activation: 1233
34: 90% completed
34: n_time_step: 903 time: 9.02 n_dofs (thermal) after cell activation: 1234
34: n_time_step: 927 time: 9.26 n_dofs (thermal) after cell activation: 1235
34: n_time_step: 928 time: 9.27 n_dofs (thermal) after cell activation: 1238
34: n_time_step: 951 time: 9.5 n_dofs (thermal) after cell activation: 1239
34: n_time_step: 975 time: 9.74 n_dofs (thermal) after cell activation: 1240
34: n_time_step: 998 time: 9.97 n_dofs (thermal) after cell activation: 1241
34: 100% completed
34: Test case hourglass did not check any assertions
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(169): Leaving test case "hourglass"; testing time: 2204659250us
34: Leaving test module "Integration_3D"; testing time: 6548265217us
34: 
34: *** No errors detected
34: Test case hourglass did not check any assertions
34: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_3d.cc(169): Leaving test case "hourglass"; testing time: 2204684517us
34: Leaving test module "Integration_3D"; testing time: 6548856028us
34: 
34: *** No errors detected
34: 
46/50 Test #34: test_integration_3d_2 ....................   Passed  6553.63 sec
test 3
      Start  3: test_integration_da_3

3: Test command: /usr/bin/mpiexec "-n" "3" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_da"
3: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
3: Test timeout computed to be: 7200
3: Running 3 test cases...
3: Entering test module "Integration_Data_Assimilation"
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation"
3: Running 3 test cases...
3: Entering test module "Integration_Data_Assimilation"
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation"
3: Running 3 test cases...
3: Entering test module "Integration_Data_Assimilation"
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation"
3: Reading the experimental log file...
3: Done. Log entries found for 1 camera(s), with 2 frame(s).
3: Starting the main time stepping loop...
3: 10% completed
3: 20% completed
3: 30% completed
3: 40% completed
3: Rank: 2 | Old parameters for member 2: 
3: Rank: 1 | Old parameters for member 1: 
3: Performing data assimilation at time 0.0211...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 2 | Number expt sites mapped to DOFs: 1
3: Rank: 1 | Number expt sites mapped to DOFs: 1
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Updating the ensemble members...
3: Done.
3: 50% completed
3: 60% completed
3: Rank: 1 | Old parameters for member 1: 
3: Performing data assimilation at time 0.0316...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 2 | Old parameters for member 2: 
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Rank: 2 | Number expt sites mapped to DOFs: 1
3: Rank: 1 | Number expt sites mapped to DOFs: 1
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Updating the ensemble members...
3: Done.
3: 70% completed
3: 80% completed
3: 90% completed
3: 100% completed
3: Reading the experimental log file...
3: Done. Log entries found for 1 camera(s), with 2 frame(s).
3: Reading the experimental log file...
3: Done. Log entries found for 1 camera(s), with 2 frame(s).
3: Reading the experimental log file...
3: Done. Log entries found for 1 camera(s), with 2 frame(s).
3: Starting the main time stepping loop...
3: Starting the main time stepping loop...
3: Starting the main time stepping loop...
3: 10% completed
3: 10% completed
3: 10% completed
3: 20% completed
3: 20% completed
3: 20% completed
3: 30% completed
3: 30% completed
3: 30% completed
3: 40% completed
3: 40% completed
3: 40% completed
3: Performing data assimilation at time 0.0211...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 0 | Old parameters for member 1: 
3: Rank: 0 | Old parameters for member 2: 
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Performing data assimilation at time 0.0211...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 0 | Old parameters for member 1: 
3: Rank: 0 | Old parameters for member 2: 
3: Performing data assimilation at time 0.0211...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 0 | Old parameters for member 1: 
3: Rank: 0 | Old parameters for member 2: 
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Updating the ensemble members...
3: Done.
3: Updating the ensemble members...
3: Done.
3: Updating the ensemble members...
3: Done.
3: 50% completed
3: 50% completed
3: 50% completed
3: 60% completed
3: 60% completed
3: 60% completed
3: Performing data assimilation at time 0.0316...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 0 | Old parameters for member 1: 
3: Rank: 0 | Old parameters for member 2: 
3: Performing data assimilation at time 0.0316...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 0 | Old parameters for member 1: 
3: Rank: 0 | Old parameters for member 2: 
3: Performing data assimilation at time 0.0316...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 0 | Old parameters for member 1: 
3: Rank: 0 | Old parameters for member 2: 
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Updating the ensemble members...
3: Done.
3: Updating the ensemble members...
3: Done.
3: Updating the ensemble members...
3: Done.
3: 70% completed
3: 70% completed
3: 70% completed
3: 80% completed
3: 80% completed
3: 80% completed
3: 90% completed
3: 90% completed
3: 90% completed
3: 100% completed
3: 100% completed
3: 100% completed
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 64879405us
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material"
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 64897074us
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material"
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 65218079us
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material"
3: Reading the experimental log file...
3: Done. Log entries found for 1 camera(s), with 1 frame(s).
3: Starting the main time stepping loop...
3: 10% completed
3: 20% completed
3: 30% completed
3: 40% completed
3: 50% completed
3: Rank: 2 | Old parameters for member 2: 
3: Rank: 1 | Old parameters for member 1: 
3: Rank: 1 | Number expt sites mapped to DOFs: 1
3: Rank: 2 | Number expt sites mapped to DOFs: 1
3: Performing data assimilation at time 0.12...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Updating the ensemble members...
3: Done.
3: 60% completed
3: 70% completed
3: 80% completed
3: 90% completed
3: 100% completed
3: Reading the experimental log file...
3: Done. Log entries found for 1 camera(s), with 1 frame(s).
3: Reading the experimental log file...
3: Done. Log entries found for 1 camera(s), with 1 frame(s).
3: Reading the experimental log file...
3: Done. Log entries found for 1 camera(s), with 1 frame(s).
3: Starting the main time stepping loop...
3: Starting the main time stepping loop...
3: Starting the main time stepping loop...
3: 10% completed
3: 10% completed
3: 10% completed
3: 20% completed
3: 20% completed
3: 20% completed
3: 30% completed
3: 30% completed
3: 30% completed
3: 40% completed
3: 40% completed
3: 40% completed
3: 50% completed
3: 50% completed
3: 50% completed
3: Performing data assimilation at time 0.12...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 0 | Old parameters for member 1: 
3: Rank: 0 | Old parameters for member 2: 
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Performing data assimilation at time 0.12...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 0 | Old parameters for member 1: 
3: Rank: 0 | Old parameters for member 2: 
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Performing data assimilation at time 0.12...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 0 | Old parameters for member 1: 
3: Rank: 0 | Old parameters for member 2: 
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Updating the ensemble members...
3: Done.
3: 60% completed
3: Updating the ensemble members...
3: Done.
3: 60% completed
3: Updating the ensemble members...
3: Done.
3: 60% completed
3: 70% completed
3: 70% completed
3: 70% completed
3: 80% completed
3: 80% completed
3: 80% completed
3: 90% completed
3: 90% completed
3: 90% completed
3: 100% completed
3: 100% completed
3: 100% completed
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 3040684us
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material"
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 3073428us
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material"
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 2756822us
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material"
3: Reading the experimental log file...
3: Done. Log entries found for 1 camera(s), with 1 frame(s).
3: Starting the main time stepping loop...
3: 10% completed
3: 20% completed
3: 30% completed
3: 40% completed
3: 50% completed
3: Rank: 1 | Old parameters for member 1: 
3: Rank: 2 | Old parameters for member 2: 
3: Performing data assimilation at time 0.12...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 1 | Number expt sites mapped to DOFs: 1
3: Rank: 2 | Number expt sites mapped to DOFs: 1
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Updating the ensemble members...
3: Done.
3: 60% completed
3: 70% completed
3: 80% completed
3: 90% completed
3: 100% completed
3: Reading the experimental log file...
3: Done. Log entries found for 1 camera(s), with 1 frame(s).
3: Reading the experimental log file...
3: Done. Log entries found for 1 camera(s), with 1 frame(s).
3: Reading the experimental log file...
3: Done. Log entries found for 1 camera(s), with 1 frame(s).
3: Starting the main time stepping loop...
3: Starting the main time stepping loop...
3: Starting the main time stepping loop...
3: 10% completed
3: 10% completed
3: 10% completed
3: 20% completed
3: 20% completed
3: 20% completed
3: 30% completed
3: 30% completed
3: 30% completed
3: 40% completed
3: 40% completed
3: 40% completed
3: 50% completed
3: 50% completed
3: 50% completed
3: Performing data assimilation at time 0.12...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 0 | Old parameters for member 1: 
3: Rank: 0 | Old parameters for member 2: 
3: Performing data assimilation at time 0.12...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 0 | Old parameters for member 1: 
3: Rank: 0 | Old parameters for member 2: 
3: Performing data assimilation at time 0.12...
3: Rank: 0 | Old parameters for member 0: 
3: Rank: 0 | Old parameters for member 1: 
3: Rank: 0 | Old parameters for member 2: 
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Rank: 0 | Number expt sites mapped to DOFs: 1
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Getting the perturbed innovation...
3: Applying the Kalman gain...
3: Updating the ensemble members...
3: Updating the ensemble members...
3: Updating the ensemble members...
3: Done.
3: 60% completed
3: Done.
3: 60% completed
3: Done.
3: 60% completed
3: 70% completed
3: 70% completed
3: 70% completed
3: 80% completed
3: 80% completed
3: 80% completed
3: 90% completed
3: 90% completed
3: 90% completed
3: 100% completed
3: 100% completed
3: 100% completed
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2845468us
3: Leaving test module "Integration_Data_Assimilation"; testing time: 70816099us
3: 
3: *** No errors detected
3: 
3: *** No errors detected
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2924313us
3: Leaving test module "Integration_Data_Assimilation"; testing time: 70844536us
3: 
3: *** No errors detected
3: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2860886us
3: Leaving test module "Integration_Data_Assimilation"; testing time: 70835939us
3: 
47/50 Test  #3: test_integration_da_3 ....................   Passed   72.23 sec
test 4
      Start  4: test_integration_da_6

4: Test command: /usr/bin/mpiexec "-n" "6" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_integration_da"
4: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
4: Test timeout computed to be: 7200
4: Running 3 test cases...
4: Entering test module "Integration_Data_Assimilation"
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation"
4: Running 3 test cases...
4: Entering test module "Integration_Data_Assimilation"
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation"
4: Running 3 test cases...
4: Entering test module "Integration_Data_Assimilation"
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation"
4: Running 3 test cases...
4: Entering test module "Integration_Data_Assimilation"
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation"
4: Running 3 test cases...
4: Entering test module "Integration_Data_Assimilation"
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation"
4: Running 3 test cases...
4: Entering test module "Integration_Data_Assimilation"
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Entering test case "integration_data_assimilation"
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 2 frame(s).
4: Starting the main time stepping loop...
4: 10% completed
4: 20% completed
4: 30% completed
4: 40% completed
4: Rank: 2 | Old parameters for member 1: 
4: Rank: 3 | Old parameters for member 1: 
4: Rank: 2 | Number expt sites mapped to DOFs: 1
4: Rank: 3 | Number expt sites mapped to DOFs: 1
4: Rank: 1 | Old parameters for member 0: 
4: Performing data assimilation at time 0.0211...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 4 | Old parameters for member 2: 
4: Rank: 5 | Old parameters for member 2: 
4: Rank: 1 | Number expt sites mapped to DOFs: 1
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Rank: 5 | Number expt sites mapped to DOFs: 1
4: Rank: 4 | Number expt sites mapped to DOFs: 1
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Updating the ensemble members...
4: Done.
4: 50% completed
4: 60% completed
4: Rank: 3 | Old parameters for member 1: 
4: Rank: 2 | Old parameters for member 1: 
4: Rank: 5 | Old parameters for member 2: 
4: Rank: 4 | Old parameters for member 2: 
4: Rank: 1 | Old parameters for member 0: 
4: Performing data assimilation at time 0.0316...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 2 | Number expt sites mapped to DOFs: 1
4: Rank: 3 | Number expt sites mapped to DOFs: 1
4: Rank: 4 | Number expt sites mapped to DOFs: 1
4: Rank: 5 | Number expt sites mapped to DOFs: 1
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Rank: 1 | Number expt sites mapped to DOFs: 1
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Updating the ensemble members...
4: Done.
4: 70% completed
4: 80% completed
4: 90% completed
4: 100% completed
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 2 frame(s).
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 2 frame(s).
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 2 frame(s).
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 2 frame(s).
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 2 frame(s).
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 2 frame(s).
4: Starting the main time stepping loop...
4: Starting the main time stepping loop...
4: Starting the main time stepping loop...
4: Starting the main time stepping loop...
4: Starting the main time stepping loop...
4: Starting the main time stepping loop...
4: 10% completed
4: 10% completed
4: 10% completed
4: 10% completed
4: 10% completed
4: 10% completed
4: 20% completed
4: 20% completed
4: 20% completed
4: 20% completed
4: 20% completed
4: 20% completed
4: 30% completed
4: 30% completed
4: 30% completed
4: 30% completed
4: 30% completed
4: 30% completed
4: 40% completed
4: 40% completed
4: 40% completed
4: 40% completed
4: 40% completed
4: 40% completed
4: Performing data assimilation at time 0.0211...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Performing data assimilation at time 0.0211...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Performing data assimilation at time 0.0211...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Performing data assimilation at time 0.0211...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Performing data assimilation at time 0.0211...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Performing data assimilation at time 0.0211...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Updating the ensemble members...
4: Done.
4: Updating the ensemble members...
4: Done.
4: Updating the ensemble members...
4: Done.
4: Updating the ensemble members...
4: Done.
4: Updating the ensemble members...
4: Done.
4: Updating the ensemble members...
4: Done.
4: 50% completed
4: 50% completed
4: 50% completed
4: 50% completed
4: 50% completed
4: 50% completed
4: 60% completed
4: 60% completed
4: 60% completed
4: 60% completed
4: 60% completed
4: 60% completed
4: Performing data assimilation at time 0.0316...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Performing data assimilation at time 0.0316...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Performing data assimilation at time 0.0316...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Performing data assimilation at time 0.0316...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Performing data assimilation at time 0.0316...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Performing data assimilation at time 0.0316...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Updating the ensemble members...
4: Done.
4: Updating the ensemble members...
4: Updating the ensemble members...
4: Done.
4: Done.
4: Updating the ensemble members...
4: Done.
4: Updating the ensemble members...
4: Done.
4: Updating the ensemble members...
4: Done.
4: 70% completed
4: 70% completed
4: 70% completed
4: 70% completed
4: 70% completed
4: 70% completed
4: 80% completed
4: 80% completed
4: 80% completed
4: 80% completed
4: 80% completed
4: 80% completed
4: 90% completed
4: 90% completed
4: 90% completed
4: 90% completed
4: 90% completed
4: 90% completed
4: 100% completed
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 59308765us
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material"
4: 100% completed
4: 100% completed
4: 100% completed
4: 100% completed
4: 100% completed
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 59839474us
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material"
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 59899545us
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material"
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 60006329us
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material"
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 60047469us
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material"
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(78): Leaving test case "integration_data_assimilation"; testing time: 60074193us
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Entering test case "integration_3D_da_point_cloud_add_material"
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 1 frame(s).
4: Starting the main time stepping loop...
4: 10% completed
4: 20% completed
4: 30% completed
4: 40% completed
4: 50% completed
4: Rank: 2 | Old parameters for member 1: 
4: Rank: 3 | Old parameters for member 1: 
4: Performing data assimilation at time 0.12...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 1 | Old parameters for member 0: 
4: Rank: 5 | Old parameters for member 2: 
4: Rank: 4 | Old parameters for member 2: 
4: Rank: 3 | Number expt sites mapped to DOFs: 1
4: Rank: 2 | Number expt sites mapped to DOFs: 1
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Rank: 1 | Number expt sites mapped to DOFs: 1
4: Rank: 4 | Number expt sites mapped to DOFs: 1
4: Rank: 5 | Number expt sites mapped to DOFs: 1
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Updating the ensemble members...
4: Done.
4: 60% completed
4: 70% completed
4: 80% completed
4: 90% completed
4: 100% completed
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 1 frame(s).
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 1 frame(s).
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 1 frame(s).
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 1 frame(s).
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 1 frame(s).
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 1 frame(s).
4: Starting the main time stepping loop...
4: Starting the main time stepping loop...
4: Starting the main time stepping loop...
4: Starting the main time stepping loop...
4: Starting the main time stepping loop...
4: Starting the main time stepping loop...
4: 10% completed
4: 10% completed
4: 10% completed
4: 20% completed
4: 10% completed
4: 10% completed
4: 20% completed
4: 10% completed
4: 20% completed
4: 30% completed
4: 20% completed
4: 20% completed
4: 30% completed
4: 20% completed
4: 30% completed
4: 40% completed
4: 30% completed
4: 40% completed
4: 30% completed
4: 30% completed
4: 40% completed
4: 50% completed
4: 40% completed
4: 50% completed
4: 50% completed
4: 40% completed
4: 40% completed
4: Performing data assimilation at time 0.12...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: 50% completed
4: Performing data assimilation at time 0.12...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Performing data assimilation at time 0.12...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: 50% completed
4: 50% completed
4: Performing data assimilation at time 0.12...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Performing data assimilation at time 0.12...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Performing data assimilation at time 0.12...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Updating the ensemble members...
4: Done.
4: 60% completed
4: Updating the ensemble members...
4: Done.
4: 60% completed
4: Updating the ensemble members...
4: Done.
4: 60% completed
4: 70% completed
4: 70% completed
4: Updating the ensemble members...
4: Done.
4: 60% completed
4: 70% completed
4: 80% completed
4: Updating the ensemble members...
4: Done.
4: 60% completed
4: Updating the ensemble members...
4: Done.
4: 60% completed
4: 80% completed
4: 70% completed
4: 80% completed
4: 90% completed
4: 70% completed
4: 70% completed
4: 90% completed
4: 80% completed
4: 90% completed
4: 80% completed
4: 80% completed
4: 90% completed
4: 90% completed
4: 90% completed
4: 100% completed
4: 100% completed
4: 100% completed
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 2807991us
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material"
4: 100% completed
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 3442447us
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material"
4: 100% completed
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 2720963us
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material"
4: 100% completed
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 2748199us
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material"
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 2828441us
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material"
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(148): Leaving test case "integration_3D_da_point_cloud_add_material"; testing time: 3005400us
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Entering test case "integration_3D_da_ray_add_material"
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 1 frame(s).
4: Starting the main time stepping loop...
4: 10% completed
4: 20% completed
4: 30% completed
4: 40% completed
4: 50% completed
4: Rank: 5 | Old parameters for member 2: 
4: Rank: 4 | Old parameters for member 2: 
4: Rank: 2 | Old parameters for member 1: 
4: Rank: 3 | Old parameters for member 1: 
4: Performing data assimilation at time 0.12...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 1 | Old parameters for member 0: 
4: Rank: 4 | Number expt sites mapped to DOFs: 1
4: Rank: 5 | Number expt sites mapped to DOFs: 1
4: Rank: 1 | Number expt sites mapped to DOFs: 1
4: Rank: 2 | Number expt sites mapped to DOFs: 1
4: Rank: 3 | Number expt sites mapped to DOFs: 1
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Updating the ensemble members...
4: Done.
4: 60% completed
4: 70% completed
4: 80% completed
4: 90% completed
4: 100% completed
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 1 frame(s).
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 1 frame(s).
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 1 frame(s).
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 1 frame(s).
4: Reading the experimental log file...
4: Reading the experimental log file...
4: Done. Log entries found for 1 camera(s), with 1 frame(s).
4: Done. Log entries found for 1 camera(s), with 1 frame(s).
4: Starting the main time stepping loop...
4: Starting the main time stepping loop...
4: Starting the main time stepping loop...
4: Starting the main time stepping loop...
4: Starting the main time stepping loop...
4: Starting the main time stepping loop...
4: 10% completed
4: 10% completed
4: 10% completed
4: 10% completed
4: 10% completed
4: 10% completed
4: 20% completed
4: 20% completed
4: 20% completed
4: 20% completed
4: 20% completed
4: 20% completed
4: 30% completed
4: 30% completed
4: 40% completed
4: 40% completed
4: 30% completed
4: 30% completed
4: 30% completed
4: 30% completed
4: 50% completed
4: 50% completed
4: 40% completed
4: 40% completed
4: 40% completed
4: 40% completed
4: Performing data assimilation at time 0.12...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Performing data assimilation at time 0.12...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: 50% completed
4: 50% completed
4: 50% completed
4: 50% completed
4: Performing data assimilation at time 0.12...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Performing data assimilation at time 0.12...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Performing data assimilation at time 0.12...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Performing data assimilation at time 0.12...
4: Rank: 0 | Old parameters for member 0: 
4: Rank: 0 | Old parameters for member 1: 
4: Rank: 0 | Old parameters for member 2: 
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Rank: 0 | Number expt sites mapped to DOFs: 1
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Getting the perturbed innovation...
4: Applying the Kalman gain...
4: Updating the ensemble members...
4: Updating the ensemble members...
4: Done.
4: 60% completed
4: Done.
4: 60% completed
4: 70% completed
4: 70% completed
4: 80% completed
4: 80% completed
4: Updating the ensemble members...
4: Done.
4: 60% completed
4: Updating the ensemble members...
4: Done.
4: 60% completed
4: Updating the ensemble members...
4: Updating the ensemble members...
4: Done.
4: 60% completed
4: Done.
4: 60% completed
4: 90% completed
4: 90% completed
4: 70% completed
4: 70% completed
4: 70% completed
4: 70% completed
4: 80% completed
4: 80% completed
4: 80% completed
4: 80% completed
4: 90% completed
4: 90% completed
4: 90% completed
4: 90% completed
4: 100% completed
4: 100% completed
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2766015us
4: Leaving test module "Integration_Data_Assimilation"; testing time: 65517352us
4: 
4: *** No errors detected
4: 
4: *** No errors detected
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2813808us
4: Leaving test module "Integration_Data_Assimilation"; testing time: 65521474us
4: 100% completed
4: 100% completed
4: 100% completed
4: 100% completed
4: 
4: *** No errors detected
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2932379us
4: Leaving test module "Integration_Data_Assimilation"; testing time: 65700957us
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2906081us
4: Leaving test module "Integration_Data_Assimilation"; testing time: 65751083us
4: 
4: *** No errors detected
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2936462us
4: Leaving test module "Integration_Data_Assimilation"; testing time: 65759044us
4: /var/jenkins/workspace/adamantine-nightly/tests/test_integration_da.cc(231): Leaving test case "integration_3D_da_ray_add_material"; testing time: 2914984us
4: Leaving test module "Integration_Data_Assimilation"; testing time: 65749917us
4: 
4: 
4: *** No errors detected
4: *** No errors detected
4: 
48/50 Test  #4: test_integration_da_6 ....................   Passed   67.74 sec
test 7
      Start  7: test_closest_source_point_adaptation_3

7: Test command: /usr/bin/mpiexec "-n" "3" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_closest_source_point_adaptation"
7: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
7: Test timeout computed to be: 7200
7: Running 1 test case...
7: Entering test module "ClosestSourcePointAdaptation"
7: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation"
7: Running 1 test case...
7: Entering test module "ClosestSourcePointAdaptation"
7: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation"
7: Running 1 test case...
7: Entering test module "ClosestSourcePointAdaptation"
7: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation"
7: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 7014111us
7: Leaving test module "ClosestSourcePointAdaptation"; testing time: 7014178us
7: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 7024913us
7: Leaving test module "ClosestSourcePointAdaptation"; testing time: 7024969us
7: 
7: *** No errors detected
7: 
7: *** No errors detected
7: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 7012804us
7: Leaving test module "ClosestSourcePointAdaptation"; testing time: 7012867us
7: 
7: *** No errors detected
7: 
49/50 Test  #7: test_closest_source_point_adaptation_3 ...   Passed    8.44 sec
test 8
      Start  8: test_closest_source_point_adaptation_6

8: Test command: /usr/bin/mpiexec "-n" "6" "/var/jenkins/workspace/adamantine-nightly/build/bin/test_closest_source_point_adaptation"
8: Working Directory: /var/jenkins/workspace/adamantine-nightly/build/tests
8: Test timeout computed to be: 7200
8: Running 1 test case...
8: Entering test module "ClosestSourcePointAdaptation"
8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation"
8: Running 1 test case...
8: Entering test module "ClosestSourcePointAdaptation"
8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation"
8: Running 1 test case...
8: Entering test module "ClosestSourcePointAdaptation"
8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation"
8: Running 1 test case...
8: Entering test module "ClosestSourcePointAdaptation"
8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation"
8: Running 1 test case...
8: Entering test module "ClosestSourcePointAdaptation"
8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation"
8: Running 1 test case...
8: Entering test module "ClosestSourcePointAdaptation"
8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Entering test case "closest_source_point_adaptation"
8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 4392266us
8: Leaving test module "ClosestSourcePointAdaptation"; testing time: 4392323us
8: 
8: *** No errors detected
8: 
8: *** No errors detected
8: 
8: *** No errors detected
8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 4398755us
8: Leaving test module "ClosestSourcePointAdaptation"; testing time: 4398826us
8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 4397443us
8: Leaving test module "ClosestSourcePointAdaptation"; testing time: 4397496us
8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 4408277us
8: Leaving test module "ClosestSourcePointAdaptation"; testing time: 4408335us
8: 
8: *** No errors detected
8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 4387468us
8: /var/jenkins/workspace/adamantine-nightly/tests/test_closest_source_point_adaptation.cc(123): Leaving test case "closest_source_point_adaptation"; testing time: 4392916us
8: Leaving test module "ClosestSourcePointAdaptation"; testing time: 4392988us
8: Leaving test module "ClosestSourcePointAdaptation"; testing time: 4387532us
8: 
8: *** No errors detected
8: 
8: *** No errors detected
8: 
50/50 Test  #8: test_closest_source_point_adaptation_6 ...   Passed    6.49 sec

The following tests passed:
	test_closest_source_point_adaptation_1
	test_data_assimilator_1
	test_experimental_data_1
	test_geometry_1
	test_heat_source_1
	test_integration_da_2
	test_closest_source_point_adaptation_2
	test_material_property_device_1
	test_material_property_1
	test_integration_da_1
	test_post_processor_1
	test_quaternion_1
	test_scan_path_1
	test_mechanical_operator_1
	test_thermal_operator_1
	test_thermal_operator_device_1
	test_timer_1
	test_utils_1
	test_validate_input_database_1
	test_thermal_physics_device_1
	test_mechanical_physics_1
	test_integration_2d_device_1
	test_integration_2d_1
	test_integration_3d_amr_1
	test_integration_3d_amr_device_1
	test_integration_da_augmented_1
	test_integration_3d_device_1
	test_material_deposition_1
	test_microstructure_1
	test_thermal_physics_1
	test_ensemble_management_1
	test_connected_components_1
	test_connected_components_2
	test_integration_2d_2
	test_integration_2d_device_2
	test_integration_3d_amr_2
	test_integration_3d_amr_device_2
	test_integration_da_augmented_2
	test_material_deposition_2
	test_microstructure_2
	test_thermal_physics_2
	test_ensemble_management_2
	test_integration_3d_2
	test_integration_da_3
	test_integration_da_6
	test_closest_source_point_adaptation_3
	test_closest_source_point_adaptation_6

94% tests passed, 3 tests failed out of 50

Total Test time (real) = 13997.76 sec

The following tests FAILED:
	 33 - test_integration_3d_1 (Timeout)
	 41 - test_integration_thermoelastic_1 (Timeout)
	 42 - test_integration_thermoelastic_2 (Failed)
Errors while running CTest
Output from these tests are in: /var/jenkins/workspace/adamantine-nightly/build/Testing/Temporary/LastTest.log
Use "--rerun-failed --output-on-failure" to re-run the failed cases verbosely.
[Pipeline] }
[Pipeline] // dir
Post stage
[Pipeline] xunit
INFO: Processing CTest-Version 3.x (default)
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
$ docker stop --time=1 b18b7d4ffbf7140e166255232090717e57ca2131a79191f8a346cbeb91624c6a
INFO: [CTest-Version 3.x (default)] - 1 test report file(s) were found with the pattern 'build/Testing/**/Test.xml' relative to '/var/jenkins/workspace/adamantine-nightly' for the testing framework 'CTest-Version 3.x (default)'.
$ docker rm -f --volumes b18b7d4ffbf7140e166255232090717e57ca2131a79191f8a346cbeb91624c6a
[Pipeline] // withDockerContainer
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
Failed in branch CUDA
[Pipeline] // parallel
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // timeout
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] End of Pipeline
Also:   org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: 9004f574-a69d-4bef-a677-d4c42899f191
Also:   	Also:   org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: 8686e941-7280-498f-97e6-911a0277f828
hudson.AbortException: script returned exit code 8
		at PluginClassLoader for workflow-durable-task-step//org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.handleExit(DurableTaskStep.java:689)
		at PluginClassLoader for workflow-durable-task-step//org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.check(DurableTaskStep.java:625)
		at PluginClassLoader for workflow-durable-task-step//org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.run(DurableTaskStep.java:566)
		at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
		at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
		at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
hudson.remoting.ChannelClosedException: Channel "unknown": Protocol stack cannot write data anymore. It is not open for write
	at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer$ByteBufferCommandTransport.write(ChannelApplicationLayer.java:338)
	at hudson.remoting.AbstractByteBufferCommandTransport.write(AbstractByteBufferCommandTransport.java:336)
	at hudson.remoting.Channel.send(Channel.java:829)
	at hudson.remoting.Request.call(Request.java:168)
	at hudson.remoting.Channel.call(Channel.java:1107)
	at hudson.FilePath.act(FilePath.java:1245)
	at hudson.FilePath.act(FilePath.java:1234)
	at hudson.FilePath.mkdirs(FilePath.java:1425)
	at PluginClassLoader for git//hudson.plugins.git.GitSCM.createClient(GitSCM.java:843)
	at PluginClassLoader for git//hudson.plugins.git.GitSCM._checkout(GitSCM.java:1299)
	at PluginClassLoader for git//hudson.plugins.git.GitSCM.checkout(GitSCM.java:1277)
	at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep.checkout(SCMStep.java:136)
	at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:101)
	at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:88)
	at PluginClassLoader for workflow-step-api//org.jenkinsci.plugins.workflow.steps.SynchronousNonBlockingStepExecution.lambda$start$0(SynchronousNonBlockingStepExecution.java:49)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
	at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
	at java.base/java.lang.Thread.run(Unknown Source)
Finished: FAILURE